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Installing tofu on windows

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Laura S. Mendoza edited this page Aug 30, 2019 · 2 revisions

This is a quick tutorial on how to install and use ToFu on Windows. It supposes you are an absolute beginner in coding. If you have some experience you can probably skip some steps.

Before installing ToFu

Installing Anaconda

We will use Miniconda (light version of Anaconda, but you can also work with Anaconda) not only to install and manage the packages necessary for installing ToFu, but also to have a working bash-like Terminal.

Creating a conda environment

We are going to create an environment specific for ToFu.

$ conda create -n tofu3 python=3.6 scipy numpy cython git pandas
$ conda activate tofu3
$ conda install m2-base # Get some basic Linux/bash commands (ls, cd, mv, ...)

This creates a conda environment named "tofu3" and installs scipy, numpy and cython. The second command activates this environment.

Get the repository

  • Create a ssh public key and add it to your GitHub account: follow this tutorial.
  • Go to ToFu's GitHub repository: here.
  • Click on "clone or download" and swith to the option "Use SSH". Copy the link.
  • Move to where you would like to install ToFu $ cd some_path
  • $ git clone [email protected]:ToFuProject/tofu.git (make sure you remember the path where you are installing, if you want to install it into your home repository, just make sure to cd ~ before the git clone...)

Installing ToFu

  • Move to the tofu directory, probably: cd ~/tofu
  • Switch to the git branch you will be working on. If you are just starting you probably want to start from the latest develop branch: git checkout devel. If you are not familiar with git take a look at this tutorial (long) or this short one
  • Compile python setup.py build_ext --inplace
  • We suggest you installing python inside tofu/usr, you will have to modify your $PYTHONPATH to include this path. How to modify environment variables on Windows
  • python setup.py install --prefix=$TOFU_DIR\\usr
  • Make sure tests are running nosetests

Contribute

If you wish to contribute, you will probably need a text editor, you can use Visual Studio's editor.

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