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✨ Add OME-TIFF Writer to Utils #929
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shaneahmed
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Apr 30, 2025
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- This PR saves a NumPy or Zarr Array to OME tiff. This will help to save probability maps from deep learning models as ome.tiff which can be visualized using TIAViz.
- The image is written as tiles and stitched in OME tiff along with associated necessary metadata.
- The output file should be readable using multichannel viewer in 🆕Multichannel Image Reading #825
- Reading with QuPath has been tested.
- This will help to save probability maps from deep learning models as ome tiff which can be visualized using TIAViz.
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## develop #929 +/- ##
========================================
Coverage 99.70% 99.70%
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Files 71 71
Lines 8847 8874 +27
Branches 1154 1161 +7
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+ Hits 8821 8848 +27
Misses 23 23
Partials 3 3 ☔ View full report in Codecov by Sentry. 🚀 New features to boost your workflow:
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The output file should be readable using multichannel viewer in #825 |
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