Adapt algorithms with names starting with [j-n] (#37)

* feat: adapt algorithms with names starting with [j-n]

* fix: numenta image build

* fix(multi_hmm): jax-version

knn/Dockerfile

@@ -1,11 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/pyod:0.2.5
+FROM ghcr.io/timeeval/pyod:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 # install algorithm dependencies
 COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
-COPY algorithm.py .
+COPY manifest.json /app/
+COPY algorithm.py /app/

knn/manifest.json

@@ -2,7 +2,7 @@
     "title": "KNN",
     "description": "Implementation of https://doi.org/10.1145/342009.335437.",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Sridhar Ramaswamy,Rajeev Rastogi, Kyuseok Shim",
     "language": "Python",
     "type": "Detector",

laser_dbn/Dockerfile

@@ -1,11 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 COPY requirements.txt /app/
-COPY algorithm.py /app/
-COPY laser_dbn /app/laser_dbn
-
 RUN pip install -r /app/requirements.txt
+
+COPY manifest.json /app/
+COPY laser_dbn /app/laser_dbn
+COPY algorithm.py /app/

laser_dbn/manifest.json

@@ -2,7 +2,7 @@
     "title": "LaserDBN",
     "description": "Implementation of https://doi.org/10.1007/978-3-662-53806-7_3",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Alberto Ogbechie, Javier Díaz-Rozo, Pedro Larrañaga, Concha Bielza",
     "language": "Python",
     "type": "Detector",

left_stampi/Dockerfile

@@ -1,10 +1,12 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses="BSD-3-Clause"
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 COPY requirements.txt /app/
 RUN pip install -r requirements.txt
 
+COPY manifest.json /app/
 COPY algorithm.py /app/

left_stampi/manifest.json

@@ -2,7 +2,7 @@
   "title": "Left STAMPi",
   "description": "Implementation of https://www.cs.ucr.edu/~eamonn/PID4481997_extend_Matrix%20Profile_I.pdf",
   "inputDimensionality": "univariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Chin-Chia Michael Yeh, Yan Zhu, Liudmila Ulanova, Nurjahan Begum, Yifei Ding, Hoang Anh Dau, Diego Furtado Silva, Abdullah Mueen, and Eamonn Keogh",
   "language": "Python",
   "type": "Detector",

lof/Dockerfile

@@ -1,11 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/pyod:0.2.5
+FROM ghcr.io/timeeval/pyod:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 # install algorithm dependencies
 COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
-COPY algorithm.py .
+COPY manifest.json /app/
+COPY algorithm.py /app/

lof/manifest.json

@@ -2,7 +2,7 @@
     "title": "LOF",
     "description": "Implementation of https://doi.org/10.1145/342009.335388.",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Markus M. Breunig, Hans-Peter Kriegel, Raymond T. Ng, Jörg Sander",
     "language": "Python",
     "type": "Detector",

lstm_ad/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5
+FROM ghcr.io/timeeval/python3-torch:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
@@ -9,4 +10,5 @@ COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
 COPY lstm_ad /app/lstm_ad
+COPY manifest.json /app/
 COPY algorithm.py /app/

lstm_ad/manifest.json

@@ -2,7 +2,7 @@
   "title": "LSTM-AD",
   "description": "Implementation of https://www.elen.ucl.ac.be/Proceedings/esann/esannpdf/es2015-56.pdf",
   "inputDimensionality": "multivariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Pankaj Malhotra, Lovekesh Vig, Gautam Shroff, Puneet Agarwal",
   "language": "Python",
   "type": "Detector",

lstm_vae/Dockerfile

@@ -1,11 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5
+FROM ghcr.io/timeeval/python3-torch:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt;
 
 COPY src /app/src
+COPY manifest.json /app/
 COPY algorithm.py /app/

lstm_vae/manifest.json

@@ -2,7 +2,7 @@
     "title": "LSTM-VAE",
     "description": "self implementation of: https://ieeexplore.ieee.org/document/8279425",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Siddeshkanth Logonathan",
     "learningType": "Semi-Supervised",
     "language": "Python",

median_method/Dockerfile

@@ -1,28 +1,13 @@
-# Separate build image!
-#----------------------------
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5 as build
-
-LABEL maintainer="[email protected]"
-
-# install build dependencies
-RUN apt-get update && apt-get install -y --no-install-recommends build-essential
-
-RUN python -m venv --system-site-packages /opt/venv
-ENV PATH="/opt/venv/bin:$PATH"
-
-# build and install dependencies
-RUN pip install cython
-COPY requirements.txt .
-RUN pip install -r ./requirements.txt
-#----------------------------
-
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5 as runtime
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
-ENV PATH="/opt/venv/bin:$PATH"
 
-COPY --from=build /opt/venv /opt/venv
+COPY requirements.txt /app/
+RUN pip install -r /app/requirements.txt
+
 COPY median_method.py /app/
+COPY manifest.json /app/
 COPY algorithm.py /app/

median_method/manifest.json

@@ -2,7 +2,7 @@
     "title": "MedianMethod",
     "description": "Implementation of https://doi.org/10.1007/s10115-006-0026-6",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "",
     "language": "Python",
     "type": "Detector",

mscred/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5
+FROM ghcr.io/timeeval/python3-torch:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
@@ -9,4 +10,5 @@ COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
 COPY mscred /app/mscred
+COPY manifest.json /app/
 COPY algorithm.py /app/

mscred/manifest.json

@@ -2,7 +2,7 @@
   "title": "MSCRED",
   "description": "Implementation of https://doi.org/10.1609/aaai.v33i01.33011409",
   "inputDimensionality": "multivariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Chuxu Zhang, Dongjin Song, Yuncong Chen, Xinyang Feng, Cristian Lumezanu, Wei Cheng, Jingchao Ni, Bo Zong, Haifeng Chen, Nitesh V. Chawla",
   "language": "Python",
   "type": "Detector",

mstamp/Dockerfile

@@ -1,10 +1,12 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses="BSD-3-Clause"
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 COPY requirements.txt /app/
-RUN pip install -r requirements.txt
+RUN pip install -r /app/requirements.txt
 
+COPY manifest.json /app/
 COPY algorithm.py /app/

mstamp/manifest.json

@@ -2,7 +2,7 @@
   "title": "mSTAMP",
   "description": "Implementation of http://www.cs.ucr.edu/%7Eeamonn/Motif_Discovery_ICDM.pdf",
   "inputDimensionality": "multivariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Chin-Chia Michael Yeh, Nickolas Kavantzas, and Eamonn Keogh",
   "language": "Python",
   "type": "Detector",

mtad_gat/Dockerfile

@@ -1,4 +1,4 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5 as build
+FROM ghcr.io/timeeval/python3-torch:0.3.0 as build
 
 COPY sr /app/sr
 
@@ -11,12 +11,14 @@ RUN set -eux; \
 RUN pip install Cython
 RUN cd /app/sr/; python setup.py install
 
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5 as eval
+FROM ghcr.io/timeeval/python3-torch:0.3.0 as eval
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 COPY --from=build /usr/local/lib/python3.7/site-packages /usr/local/lib/python3.7/site-packages
 COPY mtad_gat /app/mtad_gat
+COPY manifest.json /app/
 COPY algorithm.py /app/

mtad_gat/manifest.json

@@ -2,7 +2,7 @@
   "title": "MTAD-GAT",
   "description": "Implementation of http://arxiv.org/abs/2009.02040",
   "inputDimensionality": "multivariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Hang Zhao, Yujing Wang, Juanyong Duan, Congrui Huang, Defu Cao, Yunhai Tong, Bixiong Xu, Jing Bai, Jie Tong, Qi Zhang",
   "language": "Python",
   "type": "Detector",

multi_hmm/Dockerfile

@@ -1,11 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
-COPY algorithm.py /app/
 COPY multi_hmm /app/multi_hmm
+COPY manifest.json /app/
+COPY algorithm.py /app/

multi_hmm/manifest.json

@@ -2,7 +2,7 @@
     "title": "MultiHMM",
     "description": "Implementation of https://doi.org/10.1016/j.asoc.2017.06.035",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Jinbo Li, Witold Pedrycz, Iqbal Jamal",
     "language": "Python",
     "type": "Detector",

multi_hmm/requirements.txt

@@ -3,3 +3,4 @@ pandas
 scikit-learn
 pomegranate==0.14.5
 fuzzy-c-means==1.2.4
+jax==0.2.10

multi_subsequence_lof/Dockerfile

@@ -1,11 +1,13 @@
-FROM registry.gitlab.hpi.de/akita/i/pyod:0.2.5
+FROM ghcr.io/timeeval/pyod:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 # install algorithm dependencies
 COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
-COPY algorithm.py .
+COPY manifest.json /app/
+COPY algorithm.py /app/

multi_subsequence_lof/manifest.json

@@ -2,7 +2,7 @@
     "title": "Multi-Sub-LOF",
     "description": "LOF on sliding windows of multivariate time series to detect subsequence anomalies.",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Sebastian Schmidl, Niklas Köhnecke",
     "language": "Python",
     "type": "Detector",

mvalmod/Dockerfile

@@ -1,6 +1,7 @@
-FROM registry.gitlab.hpi.de/akita/i/tsmp:0.2.5
+FROM ghcr.io/timeeval/tsmp:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.r"
 

mvalmod/manifest.json

@@ -2,7 +2,7 @@
     "title": "mVALMOD",
     "description": "Implementation of https://doi.org/10.1007/s10618-020-00685-w summed up for every channel.",
     "inputDimensionality": "multivariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Michele Linardi, Yan Zhu, Themis Palpanas, Eamonn Keogh",
     "language": "R",
     "type": "Detector",

norma/manifest.json

@@ -2,7 +2,7 @@
     "title": "NormA",
     "description": "Improved algorithm based on NorM (https://doi.org/10.1109/ICDE48307.2020.00182).",
     "inputDimensionality": "univariate",
-    "version": "0.1",
+    "version": "0.3.0",
     "authors": "Paul Boniol, Michele Linardi, Federico Roncallo, Themis Palpanas",
     "language": "Python",
     "type": "Detector",

normalizing_flows/Dockerfile

@@ -1,10 +1,11 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-torch:0.2.5
+FROM ghcr.io/timeeval/python3-torch:0.3.0
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses=MIT
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 COPY requirements.txt /app/
 RUN pip install -r /app/requirements.txt
 
-COPY . /app
+COPY . /app/

normalizing_flows/manifest.json

@@ -2,7 +2,7 @@
   "title": "Normalizing Flows",
   "description": "Implementation of https://arxiv.org/abs/1912.09323",
   "inputDimensionality": "multivariate",
-  "version": "0.1",
+  "version": "0.3.0",
   "authors": "Artem Ryzhikov, Maxim Borisyak, Andrey Ustyuzhanin, Denis Derkach",
   "language": "Python",
   "type": "Detector",

novelty_svr/Dockerfile

@@ -1,13 +1,15 @@
-FROM registry.gitlab.hpi.de/akita/i/python3-base:0.2.5
+FROM ghcr.io/timeeval/python3-base:0.3.0
+
 
 LABEL maintainer="[email protected]"
+LABEL org.opencontainers.image.licenses="GPL-3.0"
 
 ENV ALGORITHM_MAIN="/app/algorithm.py"
 
 # install python dependencies
-COPY requirements.txt .
-RUN pip install -r ./requirements.txt
+COPY requirements.txt /app/
+RUN pip install -r /app/requirements.txt
 
-COPY model.py .
-COPY algorithm.py .
-COPY manifest.json .
+COPY model.py /app/
+COPY manifest.json /app/
+COPY algorithm.py /app/