Release 0.9.1 (#242)

* update NEWS.md

* set version to 0.9.1

* Fix pkgdown rendering of news (#240)

* Move NEWS to package root

* fix pkgdown rendering of NEWS

* update pkdown after assist from @aaron in #240 (but w/o cran dates)

* roll a version display and license year

* one more NEWS.md update and docs/ generation

* install palmerpenguins under Azure Pipelines as it is suggested

* test for install log and cat it to stdout if found

* adjust tools.sh script for move of NEWS.md to top-level

* remove display of installation log

* appease R-devel CMD check: derive Authors from Authors@R, URL fix

* final pkgdown re-run

Co-authored-by: Aaron Wolen <[email protected]>

.ci/azure/build-and-check.yaml

@@ -3,3 +3,6 @@ steps:
       R CMD build --no-build-vignettes --no-manual .
       R CMD check --no-manual --no-vignettes tiledb_*.tar.gz
     displayName: 'Run check'
+
+## -- use this to display installation log
+## test -f /*/*/work/1/s/tiledb.Rcheck/00install.out && cat /*/*/work/1/s/tiledb.Rcheck/00install.out

.ci/azure/install-dependencies.yaml

@@ -1,3 +1,3 @@
 steps:
-  - script: Rscript -e 'install.packages(c("Rcpp", "nanotime", "tinytest", "curl", "bit64", "knitr", "rmarkdown", "minidown"))'
+  - script: Rscript -e 'install.packages(c("Rcpp", "nanotime", "tinytest", "curl", "bit64", "knitr", "rmarkdown", "minidown", "palmerpenguins"))'
     displayName: 'Install dependencies'

DESCRIPTION

@@ -1,10 +1,9 @@
 Package: tiledb
 Type: Package
-Version: 0.9.0
+Version: 0.9.1
 Title: Sparse and Dense Multidimensional Array Storage Engine for Data Science
-Author: TileDB, Inc.
-Copyright: TileDB, Inc.
-Maintainer: Dirk Eddelbuettel <[email protected]>
+Authors@R: c(person("TileDB, Inc.", role = c("aut", "cph")),
+ person("Dirk", "Eddelbuettel", email = "[email protected]", role = "cre"))
 Description: The data science storage engine 'TileDB' introduces a
  powerful on-disk format for multi-dimensional arrays. It supports
  dense and sparse arrays, dataframes and key-values stores, cloud
@@ -14,8 +13,7 @@ Description: The data science storage engine 'TileDB' introduces a
  travel'), metadata and groups. It is implemented as an embeddable
  cross-platform C++ library with APIs from several languages, and
  integrations.
-Authors@R: c(person("TileDB, Inc.", role = c("aut", "cph")),
- person("Dirk", "Eddelbuettel", email = "[email protected]", role = "cre"))
+Copyright: TileDB, Inc.
 License: MIT + file LICENSE
 URL: https://github.com/TileDB-Inc/TileDB-R
 BugReports: https://github.com/TileDB-Inc/TileDB-R/issues

inst/NEWS.md → NEWS.md

@@ -1,13 +1,23 @@
-# Ongoing
+# tiledb 0.9.1
 
-* This release of the R package builds against [TileDB 2.2.7](https://github.com/TileDB-Inc/TileDB/releases/tag/2.2.7), but has also been tested against two previous release series as well as the development version.
+* This release of the R package builds against [TileDB 2.2.9](https://github.com/TileDB-Inc/TileDB/releases/tag/2.2.9), but has also been tested against previous releases as well as the development version.
 
 ## Improvements
 
 * A new vignette show use of TileDB array via RMariaDB and the MyTile extension to MariaDB (#221)
 
 * Matrices can now be returned directly from suitable two-dimensional TileDB arrays (#225)
 
+* More data types are supported in the non-empty domain accessor function (#229)
+
+* The DESCRIPTION, README.md and pkgdown site were updated (#230)
+
+* Creation of TileDB arrays from data.frame object has been made more robust (#238)
+
+* On startup, versions numbers of the R package and the TileDB Embedded library are displayed (#239)
+
+* The pkgdown website now shows the ChangeLog derived from this NEWS file (#240)
+
 ## Bug Fixes
 
 * Two tests with datetime comparisons which fail only on one macOS system are now conditional (#216)
@@ -20,8 +30,18 @@
 
 * Writes from data.frame objects to dense array revert back to column-major order (#226)
 
+* Tests of sparse writes to dense matrices now use UNORDERED layout (#228)
+
+* Data.frame returns of selected columns now coversion dimensions as well (#231)
+
+* Schema creation has been generalized and made more robust (#232)
+
+* Selection of dimension ranges now maps date and datetime values correctly (#233, #241)
+
+* Selection and setting of dimension ranges has been generalized and made more robust (#235, #236)
+
 
-# 0.9.0
+# tiledb 0.9.0
 
 * This release of the R package builds against [TileDB 2.2.4](https://github.com/TileDB-Inc/TileDB/releases/tag/2.2.4), but has also been tested against two previous release series as well as the development version.
 
@@ -84,7 +104,7 @@
 * Small tweaks to timezone and factor settings in unit tests, and vignette (#213, #214, #215)
 
 
-# 0.8.2
+# tiledb 0.8.2
 
 * This release of the R package builds against [TileDB 2.1.1](https://github.com/TileDB-Inc/TileDB/releases/tag/2.1.1), but has also been tested against previous releases as well as the development version.
 
@@ -99,7 +119,7 @@
 * Build scripts have been updated for use of TileDB 2.1.1 on Windows, macOS and Linux (when no system library is found) (#178)
 
 
-# 0.8.1
+# tiledb 0.8.1
 
 * This release of the R package supports [TileDB 2.1.0](https://github.com/TileDB-Inc/TileDB/releases/tag/2.1.0), but has also been tested against the previous release [TileDB 2.0.8](https://github.com/TileDB-Inc/TileDB/releases/tag/2.0.8).
 
@@ -116,7 +136,7 @@
 * A typo in the manual page source, copied three more times, has been corrected (#167)
 
 
-# 0.8.0
+# tiledb 0.8.0
 
 * This release of the R package supports [TileDB 2.0.8](https://github.com/TileDB-Inc/TileDB/releases/tag/2.0.8), but has
   also been tested against the previous release [TileDB 1.7.7](https://github.com/TileDB-Inc/TileDB/releases/tag/1.7.7).
@@ -156,7 +176,7 @@
 - The number of TBB threads will only be set once (#158)
 
 
-# 0.7.1
+# tiledb 0.7.1
 
 * This release of the R package supports [TileDB 1.7.7](https://github.com/TileDB-Inc/TileDB/releases/tag/1.7.7) and [TileDB 2.0.5](https://github.com/TileDB-Inc/TileDB/releases/tag/2.0.5)
 
@@ -183,7 +203,7 @@
 - A character conversion when retrieving array metadata resulting in an out-of-bounds reads has been corrected (#137)
 
 
-# 0.7.0
+# tiledb 0.7.0
 
 * This release of the R package supports [TileDB 1.7.7](https://github.com/TileDB-Inc/TileDB/releases/tag/1.7.7) and [TileDB 2.0.5](https://github.com/TileDB-Inc/TileDB/releases/tag/2.0.5)
 
@@ -206,7 +226,7 @@
 - An introductory vignette was added (#129, #131)
 
 
-# 0.6.0
+# tiledb 0.6.0
 
 * This release of the R package supports [TileDB 1.7.7](https://github.com/TileDB-Inc/TileDB/releases/tag/1.7.7) and [TileDB 2.0.0](https://github.com/TileDB-Inc/TileDB/releases/tag/2.0.0)
 
@@ -243,7 +263,7 @@
 - Dimension attributes must now be named
 
 
-# 0.5.0
+# tiledb 0.5.0
 
 - This release of the R package builds against the 1.7.5 releases of TileDB.
 
@@ -256,7 +276,7 @@
 - Added additional support for metadata [#106](https://github.com/TileDB-Inc/TileDB-R/pull/105)
 
 
-# 0.4.0
+# tiledb 0.4.0
 
 * This release of the R package builds against the 1.7.* releases of tiledb.
 

README.md

@@ -38,7 +38,7 @@ The most recent released version can be installed from
     > library(tiledb)
     > tiledb_version()
     major minor patch
-        2     2     4
+        2     2     9
     > help(package=tiledb)
 
 If the TileDB library is installed in a custom location, you need to pass the explicit path:

_pkgdown.yml

@@ -1,6 +1,7 @@
 template:
   params:
     bootswatch: lumen
+
 reference:
 - title: Ctx
   contents:
@@ -111,7 +112,11 @@ reference:
   - starts_with("tiledb_version")
   - matches("tiledb-package")
   - matches("limitTileDBCores")
+
 authors:
   TileDB, Inc.:
     href: "https://tiledb.com"
     html: "<img src='https://github.com/TileDB-Inc/TileDB/raw/dev/doc/source/_static/[email protected]' height=24>"
+
+news:
+  cran_dates: false