Release 0.7.0 (#130)

* updates to README reflecting new installation

* roll Travis forward to 2.0.5

* update NEWS.md

* set version to 0.7.0

* update pkgdown documentation in docs/

* also re-build html vignette on Travis

.travis.yml

@@ -13,20 +13,18 @@ jobs:
       env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:dev"
     - name: 1.7.7
       env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:1.7.7"
-    #- name: 2.0.0
-    #  env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:2.0.0"
-    - name: 2.0.1
-      env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:2.0.1"
-    - name: 2.0.2
-      env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:2.0.2"
     - name: 2.0.3
       env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:2.0.3"
+    - name: 2.0.4
+      env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:2.0.4"
+    - name: 2.0.5
+      env: DOCKER_CNTR="eddelbuettel/rocker-tiledb:2.0.5"
 
 env:
   global:
     - DOCKER_OPTS="--rm -ti -v $(pwd):/mnt -w /mnt"
-      R_BLD_OPTS="--no-build-vignettes --no-manual"
-      R_CHK_OPTS="--no-vignettes --no-manual"
+      R_BLD_OPTS="--no-manual"
+      R_CHK_OPTS="--no-manual"
 
 before_install:
   - docker pull ${DOCKER_CNTR}

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: tiledb
 Type: Package
-Version: 0.6.0
+Version: 0.7.0
 Title: Sparse and Dense Multidimensional Array Storage Engine for Data Science
 Author: TileDB, Inc.
 Maintainer: Dirk Eddelbuettel <[email protected]>

R/DenseArray.R

@@ -86,34 +86,34 @@ setMethod("show",
     , sep="")
   })
 
-#' #' Reopens a TileDB array an opened tiledb array
-#' #'
-#' #' Reopening an array is useful when the array got updated after it got opened
-#' #' and the tiledb array object got created. To sync-up with the updates,
-#' #' the user must either close the array and open again,
-#' #' or just use tiledb_reopen(array) which can be faster because
-#' #' only metdata regarding updates has to be loaded.
-#' #'
-#' #' @param object tileb array object
-#' #' @return the reopened array object
-#' #' @export
-#' setGeneric("reopen", function(object, ...) standardGeneric("reopen"))
-#'
-#' #' @export
-#' setMethod("reopen", "tiledb_dense", function(object) {
-#'   libtiledb_array_reopen(object@ptr)
-#'   return(object)
-#' })
-#'
-#' #' Closes a tiledb array object
-#' #'
-#' #' @param conn tiledb array object
-#' #' @return returns the closed array object
-#' close.tiledb_dense <- function(conn, ...)  {
-#'   stopifnot(is(conn, "tiledb_dense"))
-#'   libtiledb_array_close(conn@ptr)
-#'   return(conn);
-#' }
+# # ' Reopens a TileDB array an opened tiledb array
+# # '
+# # ' Reopening an array is useful when the array got updated after it got opened
+# # ' and the tiledb array object got created. To sync-up with the updates,
+# # ' the user must either close the array and open again,
+# # ' or just use tiledb_reopen(array) which can be faster because
+# # ' only metdata regarding updates has to be loaded.
+# # '
+# # ' @param object tileb array object
+# # ' @return the reopened array object
+# # ' @export
+# setGeneric("reopen", function(object, ...) standardGeneric("reopen"))
+#
+# # ' @export
+# setMethod("reopen", "tiledb_dense", function(object) {
+#   libtiledb_array_reopen(object@ptr)
+#   return(object)
+# })
+#
+# # ' Closes a tiledb array object
+# # '
+# # ' @param conn tiledb array object
+# # ' @return returns the closed array object
+# close.tiledb_dense <- function(conn, ...)  {
+#   stopifnot(is(conn, "tiledb_dense"))
+#   libtiledb_array_close(conn@ptr)
+#   return(conn);
+# }
 
 #' Returns true is if the array or array_schema is sparse
 #'

README.md

@@ -17,8 +17,9 @@ API](https://docs.tiledb.com/main/).
 
 ## Installation
 
-TileDB needs to be installed first (from a package or from source)
-for the TileDB R package to build and link correctly.
+TileDB needs to be present, and can to be installed first (from a package or from source)
+for the TileDB R package to build and link correctly. For macOS and Linux, a precompiled
+shared library is used during the installation of this R package.
 
 As the TileDB R package has not been published on [CRAN](https://cran.r-project.org/), it must be
 installed from source.
@@ -33,7 +34,7 @@ The most recent released version can be installed from
     > library(tiledb)
     > tiledb_version()
     major minor patch
-        2     0     0
+        2     0     5
     > help(package=tiledb)
 
 If the TileDB library is installed in a custom location, you need to pass the explicit path:
@@ -46,10 +47,10 @@ of TileDB, but should also build against the newest development version.
 
 ## Quick Links
 
-- [Installation](https://docs.tiledb.com/developer/installation)
-- [Quickstart](https://docs.tiledb.com/developer/quickstart)
-- [Reference Docs](https://tiledb-inc.github.io/TileDB-R/)
-- [Support](https://forum.tiledb.com/)
+- [TileDB Installation](https://docs.tiledb.com/developer/installation)
+- [TileDB Quickstart](https://docs.tiledb.com/developer/quickstart)
+- [TileDB R Reference Docs](https://tiledb-inc.github.io/TileDB-R/)
+- [TileDB Support](https://forum.tiledb.com/)
 
 ## Copyright
 

_pkgdown.yml

@@ -30,6 +30,7 @@ reference:
 - title: ArraySchema
   contents:
   - starts_with("tiledb_array_schema")
+  - starts_with("allows_dups")
   - matches("r_to_tiledb_type")
 - title: Attribute
   contents: