maybe-usefull-stuff A repository with scripts that could be usefull for others. Use at your own risk. how to install checkm using a virtual environment See these instructions a script to parse the data from microbecensus python2: AVG_output_parser.py Calculation dN/dS ratios from bacterial genomes dN-dS testing bacterial genomes a phylogseq tutorial viewing the html page:Phyloseq tutorial html page viewing the github formated document:Phyloseq github Comparing bacterial genomes with MASH and FastANI Comparison of Vibrionales genome similarity