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TheoreticalEcology · Jul 19, 2024 · 1f5ca2e · 1f5ca2e
1 parent 1cdbc7b
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Showing 2 changed files with 6 additions and 9 deletions.
diff --git a/PhyloSim/src/Makevars.win → PhyloSim/src/Makevars b/PhyloSim/src/Makevars.win → PhyloSim/src/Makevars
diff --git a/Readme.Rmd b/Readme.Rmd
@@ -5,6 +5,8 @@ date: "2024-07-19"
 output: 
   html_document: 
     keep_md: yes
+editor_options: 
+  chunk_output_type: console
 ---
 
 ```{r setup, include=FALSE}
@@ -19,24 +21,21 @@ A model, provided as an R package, for the simulation of spatially explicit biog
 You can install directly from gh, using the 'devtools' package:
 
 ```{r, eval = F}
-devtools::install_github(repo = "TheoreticalEcology/EcoPhyloSim/", 
-                         subdir = "phylosim",  
+devtools::install_github(repo = "TheoreticalEcology/EcoPhyloSim@v0.3", 
+                         subdir = "PhyloSim",  
                          dependencies = T, 
                          build_vignettes = T)
-
 ?PhyloSim
 browseVignettes("PhyloSim")
 ```
 
-### 
-
+### Example 
 
 ```{r}
 library(PhyloSim)
 
 # Define a parameter set
-par <- createCompletePar(x = 50, y = 50, dispersal = 1 , runs = 1000,
-        density = 0)
+par <- createCompletePar(x = 50, y = 50, dispersal = 1 , runs = 1000)
 
 # Run the model
 simu <- runSimulation(par)
@@ -58,7 +57,5 @@ plot(extantPhylogeny)
 #Look at the species area relation
 sac(simu, area = c(1,10,100,1000), rep = 100, plot= TRUE)
 
-
-
 ```