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Cleanup and rework

Cleanup and rework #22

Triggered via pull request July 19, 2024 13:46
Status Failure
Total duration 38m 43s
Artifacts

R-CMD-check.yaml

on: pull_request
Matrix: R-CMD-check
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13 errors and 77 warnings
macOS-latest (release)
No such keg: /opt/homebrew/Cellar/r
macOS-latest (release)
Build process failed
macOS-latest (release)
Process completed with exit code 1.
ubuntu-20.04 (release)
Build process failed
ubuntu-20.04 (release)
Process completed with exit code 1.
windows-latest (release)
Build process failed
windows-latest (release)
Process completed with exit code 1.
windows-latest (release)
Build process failed
windows-latest (release)
Process completed with exit code 1.
windows-latest (oldrel)
Build process failed
windows-latest (oldrel)
Process completed with exit code 1.
ubuntu-20.04 (devel)
Build process failed
ubuntu-20.04 (devel)
Process completed with exit code 1.
macOS-latest (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
macOS-latest (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
macOS-latest (release)
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
macOS-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (release)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (release)
/private/var/folders/6g/_ypptv3n2fs80_zc0xz8p1d40000gn/T/Rtmp3w3AQc/Rbuild11d25cacc09d/PhyloSim/man/rejectionSample.Rd:17: unknown macro '\item'
macOS-latest (release)
/private/var/folders/6g/_ypptv3n2fs80_zc0xz8p1d40000gn/T/Rtmp3w3AQc/Rbuild11d25cacc09d/PhyloSim/man/rejectionSample.Rd:19: unknown macro '\item'
macOS-latest (release)
/private/var/folders/6g/_ypptv3n2fs80_zc0xz8p1d40000gn/T/Rtmp3w3AQc/Rbuild11d25cacc09d/PhyloSim/man/rejectionSample.Rd:21: unknown macro '\item'
macOS-latest (release)
/private/var/folders/6g/_ypptv3n2fs80_zc0xz8p1d40000gn/T/Rtmp3w3AQc/Rbuild11d25cacc09d/PhyloSim/man/rejectionSample.Rd:23: unexpected section header '\value'
macOS-latest (release)
/private/var/folders/6g/_ypptv3n2fs80_zc0xz8p1d40000gn/T/Rtmp3w3AQc/Rbuild11d25cacc09d/PhyloSim/man/rejectionSample.Rd:26: unexpected section header '\description'
macOS-latest (release)
/private/var/folders/6g/_ypptv3n2fs80_zc0xz8p1d40000gn/T/Rtmp3w3AQc/Rbuild11d25cacc09d/PhyloSim/man/rejectionSample.Rd:29: unexpected section header '\author'
macOS-latest (release)
/private/var/folders/6g/_ypptv3n2fs80_zc0xz8p1d40000gn/T/Rtmp3w3AQc/Rbuild11d25cacc09d/PhyloSim/man/rejectionSample.Rd:32: unexpected END_OF_INPUT '
macOS-latest (release)
/private/var/folders/6g/_ypptv3n2fs80_zc0xz8p1d40000gn/T/Rtmp3w3AQc/Rbuild11d25cacc09d/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:20: unknown macro '\item'
macOS-latest (release)
/private/var/folders/6g/_ypptv3n2fs80_zc0xz8p1d40000gn/T/Rtmp3w3AQc/Rbuild11d25cacc09d/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:22: unknown macro '\item'
macOS-latest (release)
/private/var/folders/6g/_ypptv3n2fs80_zc0xz8p1d40000gn/T/Rtmp3w3AQc/Rbuild11d25cacc09d/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:24: unknown macro '\item'
ubuntu-20.04 (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-20.04 (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ubuntu-20.04 (release)
No files were found with the provided path: check. No artifacts will be uploaded.
ubuntu-20.04 (release)
/tmp/RtmpQ1vUlr/Rbuild45ce450d8082/PhyloSim/man/rejectionSample.Rd:17: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpQ1vUlr/Rbuild45ce450d8082/PhyloSim/man/rejectionSample.Rd:19: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpQ1vUlr/Rbuild45ce450d8082/PhyloSim/man/rejectionSample.Rd:21: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpQ1vUlr/Rbuild45ce450d8082/PhyloSim/man/rejectionSample.Rd:23: unexpected section header '\value'
ubuntu-20.04 (release)
/tmp/RtmpQ1vUlr/Rbuild45ce450d8082/PhyloSim/man/rejectionSample.Rd:26: unexpected section header '\description'
ubuntu-20.04 (release)
/tmp/RtmpQ1vUlr/Rbuild45ce450d8082/PhyloSim/man/rejectionSample.Rd:29: unexpected section header '\author'
ubuntu-20.04 (release)
/tmp/RtmpQ1vUlr/Rbuild45ce450d8082/PhyloSim/man/rejectionSample.Rd:32: unexpected END_OF_INPUT '
ubuntu-20.04 (release)
/tmp/RtmpQ1vUlr/Rbuild45ce450d8082/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:20: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpQ1vUlr/Rbuild45ce450d8082/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:22: unknown macro '\item'
ubuntu-20.04 (release)
/tmp/RtmpQ1vUlr/Rbuild45ce450d8082/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:24: unknown macro '\item'
windows-latest (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpchSDnj/Rbuild11ac4c343590/PhyloSim/man/rejectionSample.Rd:17: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpchSDnj/Rbuild11ac4c343590/PhyloSim/man/rejectionSample.Rd:19: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpchSDnj/Rbuild11ac4c343590/PhyloSim/man/rejectionSample.Rd:21: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpchSDnj/Rbuild11ac4c343590/PhyloSim/man/rejectionSample.Rd:23: unexpected section header '\value'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpchSDnj/Rbuild11ac4c343590/PhyloSim/man/rejectionSample.Rd:26: unexpected section header '\description'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpchSDnj/Rbuild11ac4c343590/PhyloSim/man/rejectionSample.Rd:29: unexpected section header '\author'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpchSDnj/Rbuild11ac4c343590/PhyloSim/man/rejectionSample.Rd:32: unexpected END_OF_INPUT '
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpchSDnj/Rbuild11ac4c343590/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:20: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpchSDnj/Rbuild11ac4c343590/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:22: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/RtmpchSDnj/Rbuild11ac4c343590/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:24: unknown macro '\item'
windows-latest (release)
No files were found with the provided path: check. No artifacts will be uploaded.
windows-latest (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
windows-latest (release)
No files were found with the provided path: check. No artifacts will be uploaded.
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/Rtmp4oFsIa/Rbuild11a8525c2d21/PhyloSim/man/rejectionSample.Rd:17: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/Rtmp4oFsIa/Rbuild11a8525c2d21/PhyloSim/man/rejectionSample.Rd:19: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/Rtmp4oFsIa/Rbuild11a8525c2d21/PhyloSim/man/rejectionSample.Rd:21: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/Rtmp4oFsIa/Rbuild11a8525c2d21/PhyloSim/man/rejectionSample.Rd:23: unexpected section header '\value'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/Rtmp4oFsIa/Rbuild11a8525c2d21/PhyloSim/man/rejectionSample.Rd:26: unexpected section header '\description'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/Rtmp4oFsIa/Rbuild11a8525c2d21/PhyloSim/man/rejectionSample.Rd:29: unexpected section header '\author'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/Rtmp4oFsIa/Rbuild11a8525c2d21/PhyloSim/man/rejectionSample.Rd:32: unexpected END_OF_INPUT '
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/Rtmp4oFsIa/Rbuild11a8525c2d21/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:20: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/Rtmp4oFsIa/Rbuild11a8525c2d21/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:22: unknown macro '\item'
windows-latest (release)
C:/Users/runneradmin/AppData/Local/Temp/Rtmp4oFsIa/Rbuild11a8525c2d21/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:24: unknown macro '\item'
windows-latest (oldrel)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
windows-latest (oldrel)
rejectionSample.Rd:17: unknown macro '\item'
windows-latest (oldrel)
rejectionSample.Rd:19: unknown macro '\item'
windows-latest (oldrel)
rejectionSample.Rd:21: unknown macro '\item'
windows-latest (oldrel)
rejectionSample.Rd:23: unexpected section header '\value'
windows-latest (oldrel)
rejectionSample.Rd:26: unexpected section header '\description'
windows-latest (oldrel)
rejectionSample.Rd:29: unexpected section header '\author'
windows-latest (oldrel)
rejectionSample.Rd:32: unexpected END_OF_INPUT '
windows-latest (oldrel)
rejectionSamplePhylosimAnalysis.Rd:20: unknown macro '\item'
windows-latest (oldrel)
rejectionSamplePhylosimAnalysis.Rd:22: unknown macro '\item'
windows-latest (oldrel)
rejectionSamplePhylosimAnalysis.Rd:24: unknown macro '\item'
windows-latest (oldrel)
No files were found with the provided path: check. No artifacts will be uploaded.
ubuntu-20.04 (devel)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-20.04 (devel)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ubuntu-20.04 (devel)
No files were found with the provided path: check. No artifacts will be uploaded.
ubuntu-20.04 (devel)
/tmp/RtmpzRqCbF/Rbuildf92053a0dc8/PhyloSim/man/rejectionSample.Rd:17: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/RtmpzRqCbF/Rbuildf92053a0dc8/PhyloSim/man/rejectionSample.Rd:19: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/RtmpzRqCbF/Rbuildf92053a0dc8/PhyloSim/man/rejectionSample.Rd:21: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/RtmpzRqCbF/Rbuildf92053a0dc8/PhyloSim/man/rejectionSample.Rd:23: unexpected section header '\value'
ubuntu-20.04 (devel)
/tmp/RtmpzRqCbF/Rbuildf92053a0dc8/PhyloSim/man/rejectionSample.Rd:26: unexpected section header '\description'
ubuntu-20.04 (devel)
/tmp/RtmpzRqCbF/Rbuildf92053a0dc8/PhyloSim/man/rejectionSample.Rd:29: unexpected section header '\author'
ubuntu-20.04 (devel)
/tmp/RtmpzRqCbF/Rbuildf92053a0dc8/PhyloSim/man/rejectionSample.Rd:32: unexpected END_OF_INPUT '
ubuntu-20.04 (devel)
/tmp/RtmpzRqCbF/Rbuildf92053a0dc8/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:20: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/RtmpzRqCbF/Rbuildf92053a0dc8/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:22: unknown macro '\item'
ubuntu-20.04 (devel)
/tmp/RtmpzRqCbF/Rbuildf92053a0dc8/PhyloSim/man/rejectionSamplePhylosimAnalysis.Rd:24: unknown macro '\item'