updated omero-py version (#94)

* updated omero-py version

* fix typo in docstring because why not

* using glencoe's zeroc-ice

* it's installing too fast (!!!) now

.github/workflows/run_tests_pr.yml

@@ -1,24 +1,26 @@
-name: Run Tests on PR
-on: pull_request
-jobs:
-  test:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v2
-      - name: Run docker compose up
-        run: docker-compose -f tests/docker-compose.yml up -d
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v2
-        with:
-          python-version: 3.8
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install flake8 pytest
-          pip install .[tables]
-      - name: Test with pytest
-        run: |
-          pytest tests/
-
-          
+name: Run Tests on PR
+on: pull_request
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+      - name: Run docker compose up
+        run: docker-compose -f tests/docker-compose.yml up -d
+      - name: Set up Python 3.8
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.8
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install flake8 pytest
+          pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20231130/zeroc_ice-3.6.5-cp38-cp38-manylinux_2_28_x86_64.whl
+          pip install .[tables]
+          sleep 60
+      - name: Test with pytest
+        run: |
+          pytest tests/
+
+          

.github/workflows/run_tests_push.yml

@@ -1,35 +1,37 @@
-name: Run Tests on push
-on: 
-  push:
-    branches: [ main ]
-jobs:
-  test:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v2
-      - name: Run docker compose up
-        run: docker-compose -f tests/docker-compose.yml up -d
-      - name: Set up Python 3.8
-        uses: actions/setup-python@v2
-        with:
-          python-version: 3.8
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install flake8 pytest
-          pip install .[tables]
-      - name: Test with pytest and generate coverage report/badge
-        run: |
-          pip install coverage coverage-badge
-          coverage run -m pytest tests/
-          coverage report -i
-          coverage-badge -f -o coverage.svg
-      - name: Commit badge
-        run: |
-          git config --global user.name 'Erick Ratamero'
-          git config --global user.email '[email protected]'
-          git add coverage.svg
-          git commit --allow-empty -am "Automated updating coverage badge"
-          git push
-
+name: Run Tests on push
+on: 
+  push:
+    branches: [ main ]
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+      - name: Run docker compose up
+        run: docker-compose -f tests/docker-compose.yml up -d
+      - name: Set up Python 3.8
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.8
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install flake8 pytest
+          pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20231130/zeroc_ice-3.6.5-cp38-cp38-manylinux_2_28_x86_64.whl
+          pip install .[tables]
+          sleep 60
+      - name: Test with pytest and generate coverage report/badge
+        run: |
+          pip install coverage coverage-badge
+          coverage run -m pytest tests/
+          coverage report -i
+          coverage-badge -f -o coverage.svg
+      - name: Commit badge
+        run: |
+          git config --global user.name 'Erick Ratamero'
+          git config --global user.email '[email protected]'
+          git add coverage.svg
+          git commit --allow-empty -am "Automated updating coverage badge"
+          git push
+

ezomero/_posts.py

@@ -423,7 +423,7 @@ def post_file_annotation(conn: BlitzGateway,
     Returns
     -------
     file_ann_id : int
-        IDs of newly created MapAnnotation
+        IDs of newly created FileAnnotation
 
     Examples
     --------

setup.py

@@ -1,27 +1,27 @@
-import setuptools
-import os
-
-with open("README.md", "r") as fh:
-    long_description = fh.read()
-
-setuptools.setup(
-    name="ezomero",
-    version=os.environ.get('VERSION', '0.0.0'),
-    maintainer="Dave Mellert",
-    maintainer_email="[email protected]",
-    description=("A suite of convenience functions for working"
-                 " with OMERO. Written and maintained by the "
-                 "Research IT team at The Jackson Laboratory."),
-    long_description=long_description,
-    long_description_content_type="text/markdown",
-    url="https://github.com/TheJacksonLaboratory/ezomero",
-    packages=setuptools.find_packages(),
-    install_requires=[
-        'omero-py == 5.16.1',
-        'numpy >= 1.22, < 2.0'
-    ],
-    extras_require={
-        "tables": ["pandas"],
-    },
-    python_requires='>=3.8'
-)
+import setuptools
+import os
+
+with open("README.md", "r") as fh:
+    long_description = fh.read()
+
+setuptools.setup(
+    name="ezomero",
+    version=os.environ.get('VERSION', '0.0.0'),
+    maintainer="Dave Mellert",
+    maintainer_email="[email protected]",
+    description=("A suite of convenience functions for working"
+                 " with OMERO. Written and maintained by the "
+                 "Research IT team at The Jackson Laboratory."),
+    long_description=long_description,
+    long_description_content_type="text/markdown",
+    url="https://github.com/TheJacksonLaboratory/ezomero",
+    packages=setuptools.find_packages(),
+    install_requires=[
+        'omero-py == 5.18.0',
+        'numpy >= 1.22, < 2.0'
+    ],
+    extras_require={
+        "tables": ["pandas"],
+    },
+    python_requires='>=3.8'
+)