Update HSCLO_GENCODE.R

TaylorResearchLab · Aug 14, 2024 · 0a945cf · 0a945cf
1 parent c843505
commit 0a945cf
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/petagraph/code/preprocessing/HSCLO_GENCODE.R b/petagraph/code/preprocessing/HSCLO_GENCODE.R
@@ -1 +1,3 @@
-for (i in 1:295559) {l <- floor(as.numeric(G[i,2])/1000)*1000; if (G[i,2]>l) {L[i,3] = paste("HSCLO"," ",G[i,6],".",l+1,"-",l+1000,sep = "")} else {L[i,3] = paste("HSCLO"," ",G[i,6],".",l-999,"-",l,sep = "")}}
+#THis scripts creates GENCODE mapping of transcript and genes found in Petgraph to HSCLO nodes at 1kbp resolution
+for (i in 1:295559) {l <- floor(as.numeric(G[i,2])/1000)*1000; 
+if (G[i,2]>l) {L[i,3] = paste("HSCLO"," ",G[i,6],".",l+1,"-",l+1000,sep = "")} else {L[i,3] = paste("HSCLO"," ",G[i,6],".",l-999,"-",l,sep = "")}}