switch to astral's setup uv command #686
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| name: Test | |
| on: [push, pull_request] | |
| jobs: | |
| # Run CLI test and pytest | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| resolution: ["highest", "lowest-direct"] | |
| steps: | |
| # Checkout the code | |
| - uses: actions/checkout@v4 | |
| # Install uv | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v3 | |
| with: | |
| version: "0.4.20" | |
| enable-cache: true | |
| # Test whether the CLI is working | |
| - name: Test CLI | |
| run: uv run -p ${{ matrix.python-version }} --resolution ${{ matrix.resolution }} seml | |
| # Test with pytest | |
| - name: Test with pytest | |
| run: | | |
| cd test | |
| uv run -p ${{ matrix.python-version }} --resolution ${{ matrix.resolution }} pytest | |
| # Test commands in a dummy environment | |
| commands: | |
| runs-on: ubuntu-22.04 # this is the lastest release supported by MongoDB | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| resolution: ["highest", "lowest-direct"] | |
| # MySQL for Slurm | |
| services: | |
| mysql: | |
| image: mysql:8.0 | |
| env: | |
| MYSQL_ROOT_PASSWORD: root | |
| ports: | |
| - "8888:3306" | |
| options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=5s --health-retries=3 | |
| steps: | |
| - name: Start MongoDB | |
| uses: supercharge/[email protected] | |
| with: | |
| mongodb-username: admin | |
| mongodb-password: admin | |
| mongodb-port: 27017 | |
| - name: Install mongosh | |
| run: | | |
| sudo apt-get install gnupg | |
| wget -qO- https://www.mongodb.org/static/pgp/server-7.0.asc | sudo tee /etc/apt/trusted.gpg.d/server-7.0.asc | |
| echo "deb [ arch=amd64,arm64 ] https://repo.mongodb.org/apt/ubuntu focal/mongodb-org/7.0 multiverse" | sudo tee /etc/apt/sources.list.d/mongodb-org-7.0.list | |
| sudo apt-get update | |
| sudo apt-get install -y mongodb-mongosh | |
| mongosh --version | |
| - name: Create seml MongoDB user | |
| run: | | |
| mongosh --host localhost:27017 -u admin -p admin --authenticationDatabase admin <<EOF | |
| db = db.getSiblingDB('seml'); | |
| db.createUser({ user: 'seml', pwd: 'seml', roles: [{ role: 'readWrite', db: 'seml' }] }); | |
| EOF | |
| - name: Setup Slurm Cluster | |
| uses: koesterlab/setup-slurm-action@v1 | |
| # Checkout the code | |
| - uses: actions/checkout@v4 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v3 | |
| with: | |
| version: "0.4.20" | |
| enable-cache: true | |
| - name: Setup virtual env | |
| run: uv sync | |
| - name: Setup seml config | |
| run: uv run seml configure --host=localhost --port=27017 --database=seml --username=seml --password=seml | |
| - name: Add | |
| run: uv run seml test_collection add ci/examples/example_config.yaml | |
| - name: Start | |
| run: uv run seml test_collection start | |
| - name: Hold | |
| run: uv run seml test_collection hold | |
| - name: Release | |
| run: uv run seml test_collection release | |
| - name: Status | |
| run: uv run seml test_collection status | |
| - name: Queue | |
| run: uv run seml queue | |
| - name: Cancel | |
| run: uv run seml test_collection cancel -y | |
| - name: Delete | |
| run: uv run seml test_collection delete -y | |
| - name: Reload sources | |
| run: uv run seml test_collection add ci/examples/example_config.yaml reload-sources -y | |
| - name: Set description | |
| run: uv run seml test_collection description set -y 'Hello World ${config.dataset}!' | |
| - name: List description | |
| run: uv run seml test_collection description list | |
| - name: Delete description | |
| run: uv run seml test_collection description delete -y | |
| - name: List | |
| run: uv run seml list |