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Add mamba support and update pangolin lineage determination #61

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merged 5 commits into from
Nov 21, 2023

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johausmann
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Closes #56
Closes #60

Add mamba support in conda profile
Updated pangolin in conda directive to version 4.3 for updated lineage determination
Updated docker container to use mamba instead of conda
add mamba to conda-incubator
@johausmann
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I updated the giltab and github CI files to use mamba instead of conda

@johausmann johausmann marked this pull request as ready for review October 26, 2023 11:19
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@priesgo priesgo left a comment

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Approving so you can merge, just one issue in the CI setup, see comment.

.gitlab-ci.yml Outdated Show resolved Hide resolved
Change .condarc to .mambarc
@johausmann johausmann merged commit 065648e into master Nov 21, 2023
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Update pangolin version in pipeline Mamba support
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