Merge pull request #25 from TRON-Bioinformatics/upgrade-pangolin

Upgrade pangolin
TRON-Bioinformatics · Sep 13, 2022 · 82cf158 · 82cf158
2 parents a4f2dd0 + e7ee3f6
commit 82cf158
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diff --git a/modules/07_lineage_annotation.nf b/modules/07_lineage_annotation.nf
@@ -9,7 +9,7 @@ process PANGOLIN_LINEAGE {
     publishDir "${params.output}", mode: "copy"
     tag "${name}"
 
-    conda (params.enable_conda ? "bioconda::pangolin=3.1.19" : null)
+    conda (params.enable_conda ? "bioconda::pangolin=4.1.2" : null)
 
     input:
         tuple val(name), val(caller), file(fasta)

diff --git a/nextflow.config b/nextflow.config
@@ -62,7 +62,7 @@ process.shell = ['/bin/bash', '-euo', 'pipefail']
 cleanup = true
 conda.createTimeout = '1 h'
 
-VERSION = '0.12.0'
+VERSION = '0.13.0'
 
 manifest {
   name = 'TRON-Bioinformatics/covigator-ngs-pipeline'