Scripts utilised in the GPA5 SMrt-AgRenSeq paper
All tree files are in the iToL_tree_configs directory. To replicate the tree figure in the paper do the following:
- Upload the .tre file to https://itol.embl.de
- Align the node labels to branch tips
- Load label_colours.txt on to tree
- Load collapse.txt on to tree
- Under the advanced tab, set collapsed clades to Iso. Triangle and toggle proportional sizing to on.
- Load text_labels.txt on to tree
- Load clades.txt on to tree
- Change label font size to 5 px
- Legend is created manually using the iToL datasets legend function