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Update README.md
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spficklin authored Nov 11, 2016
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Expand Up @@ -99,6 +99,8 @@ IPR IPR000002 Cdc20/Fizzy
IPR IPR000003 Retinoid X receptor
IPR IPR000005 Helix-turn-helix, AraC type
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Note: there are shell scripts in the terms directory of this repository to help creation of term lists. Scripts for popular controlled vocabularies are provided. See the README.md file in that directory for more details.

## Term Mapping List (--terms2features option)
A term mapping list maps the genes in the genomic background to terms in the term list. This file should be tab delimited and consist of two columns: locus/transcript ID, term name. The locus/transcript ID must be present in the genomics background file and the term name must be present in in the terms list file(s). The following is example lines from a mapping list for rice genes:

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