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Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression

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R package: condiments

Installation

You can install the condiments from bioconductor using

if(!requireNamespace("BiocManager", quietly = TRUE)) {
 install.packages("BiocManager") 
}
BiocManager::install("condiments")

To install the development version in R, run:

if(!requireNamespace("devtools", quietly = TRUE)) {
 install.packages("devtools") 
}
devtools::install_github("HectorRDB/condiments")

The installation should only take a few seconds. The dependencies of the package are listed in the DESCRIPTION file of the package.

Issues and bug reports

Please use https://github.com/HectorRDB/condiments/issues to submit issues, bug reports, and comments.

Usage

Start with the vignette online or explore on of our case studies in the paper here.

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Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression

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