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Sbol3update #41

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Sbol3update #41

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072c3fd
Updated SBOL3 examples
Mar 30, 2023
ed7810d
Updated start and end dates
Apr 28, 2023
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1,142 changes: 703 additions & 439 deletions SBOL3/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.jsonld
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14 changes: 7 additions & 7 deletions SBOL3/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.jsonld_expanded
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Expand Up @@ -144,7 +144,7 @@
"@id" : "https://synbiohub.org/public/igem/BBa_B0015_Sequence1"
} ],
"http://sbols.org/v3#end" : [ {
"@value" : "79"
"@value" : "80"
} ],
"http://sbols.org/v3#displayId" : [ {
"@value" : "Range1"
Expand Down Expand Up @@ -291,7 +291,7 @@
"@value" : "BBa_C0062_Sequence1"
} ],
"http://sbols.org/v3#description" : [ {
"@value" : "luxR sequence"
"@value" : "BBa_C0062 sequence"
} ],
"@type" : [ "http://sbols.org/v3#Sequence" ]
}, {
Expand Down Expand Up @@ -336,7 +336,7 @@
"@value" : "BBa_C0062_protein_Sequence1"
} ],
"http://sbols.org/v3#description" : [ {
"@value" : "LuxR sequence"
"@value" : "BBa_C0062_protein sequence"
} ],
"@type" : [ "http://sbols.org/v3#Sequence" ]
}, {
Expand Down Expand Up @@ -544,7 +544,7 @@
"@id" : "https://synbiohub.org/public/igem/BBa_F2620_Sequence1"
} ],
"http://sbols.org/v3#end" : [ {
"@value" : "53"
"@value" : "54"
} ],
"http://sbols.org/v3#displayId" : [ {
"@value" : "Range1"
Expand Down Expand Up @@ -745,7 +745,7 @@
"@value" : "BBa_R0040_Sequence1"
} ],
"http://sbols.org/v3#description" : [ {
"@value" : "pTetR sequence"
"@value" : "BBa_R0040 sequence"
} ],
"@type" : [ "http://sbols.org/v3#Sequence" ]
}, {
Expand Down Expand Up @@ -790,7 +790,7 @@
"@value" : "BBa_R0062_Sequence1"
} ],
"http://sbols.org/v3#description" : [ {
"@value" : "lux pR sequence"
"@value" : "BBa_R0062 sequence"
} ],
"@type" : [ "http://sbols.org/v3#Sequence" ]
}, {
Expand Down Expand Up @@ -835,7 +835,7 @@
"@value" : "TetR_protein_Sequence1"
} ],
"http://sbols.org/v3#description" : [ {
"@value" : "TetR sequence"
"@value" : "TetR_protein sequence"
} ],
"@type" : [ "http://sbols.org/v3#Sequence" ]
} ]
14 changes: 7 additions & 7 deletions SBOL3/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.nt
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@@ -1,7 +1,7 @@
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#start> "1" .
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#hasSequence> <https://synbiohub.org/public/igem/BBa_F2620_Sequence1> .
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#end> "53" .
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#end> "54" .
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#displayId> "Range1" .
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent5> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
Expand All @@ -14,7 +14,7 @@
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://sbols.org/v3#encoding> <https://identifiers.org/edam:format_1207> .
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://sbols.org/v3#elements> "atgaaaaacataaatgccgacgacacatacagaataattaataaaattaaagcttgtagaagcaataatgatattaatcaatgcttatctgatatgactaaaatggtacattgtgaatattatttactcgcgatcatttatcctcattctatggttaaatctgatatttcaatcctagataattaccctaaaaaatggaggcaatattatgatgacgctaatttaataaaatatgatcctatagtagattattctaactccaatcattcaccaattaattggaatatatttgaaaacaatgctgtaaataaaaaatctccaaatgtaattaaagaagcgaaaacatcaggtcttatcactgggtttagtttccctattcatacggctaacaatggcttcggaatgcttagttttgcacattcagaaaaagacaactatatagatagtttatttttacatgcgtgtatgaacataccattaattgttccttctctagttgataattatcgaaaaataaatatagcaaataataaatcaaacaacgatttaaccaaaagagaaaaagaatgtttagcgtgggcatgcgaaggaaaaagctcttgggatatttcaaaaatattaggttgcagtgagcgtactgtcactttccatttaaccaatgcgcaaatgaaactcaatacaacaaaccgctgccaaagtatttctaaagcaattttaacaggagcaattgattgcccatactttaaaaattaataacactgatagtgctagtgtagatcac" .
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://sbols.org/v3#displayId> "BBa_C0062_Sequence1" .
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://sbols.org/v3#description> "luxR sequence" .
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://sbols.org/v3#description> "BBa_C0062 sequence" .
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Sequence> .
<https://synbiohub.org/public/igem/BBa_B0010_Sequence1> <http://sbols.org/v3#name> "Sequence1" .
<https://synbiohub.org/public/igem/BBa_B0010_Sequence1> <http://sbols.org/v3#hasNamespace> <https://synbiohub.org/public/igem> .
Expand Down Expand Up @@ -112,7 +112,7 @@
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://sbols.org/v3#encoding> <https://identifiers.org/edam:format_1208> .
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://sbols.org/v3#elements> "NNNNNNNNNNN" .
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://sbols.org/v3#displayId> "TetR_protein_Sequence1" .
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://sbols.org/v3#description> "TetR sequence" .
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://sbols.org/v3#description> "TetR_protein sequence" .
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Sequence> .
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent2> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent2> <http://sbols.org/v3#instanceOf> <https://synbiohub.org/public/igem/BBa_B0012> .
Expand Down Expand Up @@ -156,7 +156,7 @@
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#start> "1" .
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#hasSequence> <https://synbiohub.org/public/igem/BBa_B0015_Sequence1> .
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#end> "79" .
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#end> "80" .
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#displayId> "Range1" .
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
<https://synbiohub.org/public/igem/BBa_F2620/Interaction3/Participation1> <http://sbols.org/v3#role> <https://identifiers.org/SBO:0000643> .
Expand All @@ -178,7 +178,7 @@
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://sbols.org/v3#encoding> <https://identifiers.org/edam:format_1207> .
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://sbols.org/v3#elements> "acctgtaggatcgtacaggtttacgcaagaaaatggtttgttatagtcgaataaa" .
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://sbols.org/v3#displayId> "BBa_R0062_Sequence1" .
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://sbols.org/v3#description> "lux pR sequence" .
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://sbols.org/v3#description> "BBa_R0062 sequence" .
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Sequence> .
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1> <http://sbols.org/v3#instanceOf> <https://synbiohub.org/public/igem/BBa_B0010> .
Expand Down Expand Up @@ -222,7 +222,7 @@
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://sbols.org/v3#encoding> <https://identifiers.org/edam:format_1208> .
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://sbols.org/v3#elements> "NNNNNNNNNNN" .
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://sbols.org/v3#displayId> "BBa_C0062_protein_Sequence1" .
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://sbols.org/v3#description> "LuxR sequence" .
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://sbols.org/v3#description> "BBa_C0062_protein sequence" .
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Sequence> .
<https://synbiohub.org/public/igem/BBa_F2620/Interaction3> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000170> .
<https://synbiohub.org/public/igem/BBa_F2620/Interaction3> <http://sbols.org/v3#hasParticipation> <https://synbiohub.org/public/igem/BBa_F2620/Interaction3/Participation1> .
Expand Down Expand Up @@ -267,7 +267,7 @@
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://sbols.org/v3#encoding> <https://identifiers.org/edam:format_1207> .
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://sbols.org/v3#elements> "tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcac" .
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://sbols.org/v3#displayId> "BBa_R0040_Sequence1" .
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://sbols.org/v3#description> "pTetR sequence" .
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://sbols.org/v3#description> "BBa_R0040 sequence" .
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Sequence> .
<https://synbiohub.org/public/igem/BBa_F2620/Interaction2> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000170> .
<https://synbiohub.org/public/igem/BBa_F2620/Interaction2> <http://sbols.org/v3#hasParticipation> <https://synbiohub.org/public/igem/BBa_F2620/Interaction2/Participation1> .
Expand Down
14 changes: 7 additions & 7 deletions SBOL3/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.rdf
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Expand Up @@ -161,7 +161,7 @@
<sbol:hasSequence>
<sbol:Sequence rdf:about="BBa_F2620_Sequence1"/>
</sbol:hasSequence>
<sbol:end>53</sbol:end>
<sbol:end>54</sbol:end>
<sbol:displayId>Range1</sbol:displayId>
</sbol:Range>
</sbol:hasLocation>
Expand Down Expand Up @@ -300,7 +300,7 @@
<sbol:hasSequence>
<sbol:Sequence rdf:about="BBa_B0015_Sequence1"/>
</sbol:hasSequence>
<sbol:end>79</sbol:end>
<sbol:end>80</sbol:end>
<sbol:displayId>Range1</sbol:displayId>
</sbol:Range>
</sbol:hasLocation>
Expand Down Expand Up @@ -346,7 +346,7 @@
<sbol:encoding rdf:resource="https://identifiers.org/edam:format_1207"/>
<sbol:elements>acctgtaggatcgtacaggtttacgcaagaaaatggtttgttatagtcgaataaa</sbol:elements>
<sbol:displayId>BBa_R0062_Sequence1</sbol:displayId>
<sbol:description>lux pR sequence</sbol:description>
<sbol:description>BBa_R0062 sequence</sbol:description>
</sbol:Sequence>
<sbol:Sequence rdf:about="BBa_B0034_Sequence1">
<sbol:name>Sequence1</sbol:name>
Expand All @@ -370,7 +370,7 @@
<sbol:encoding rdf:resource="https://identifiers.org/edam:format_1208"/>
<sbol:elements>NNNNNNNNNNN</sbol:elements>
<sbol:displayId>TetR_protein_Sequence1</sbol:displayId>
<sbol:description>TetR sequence</sbol:description>
<sbol:description>TetR_protein sequence</sbol:description>
</sbol:Sequence>
<sbol:Sequence rdf:about="BBa_B0012_Sequence1">
<sbol:name>Sequence1</sbol:name>
Expand All @@ -386,22 +386,22 @@
<sbol:encoding rdf:resource="https://identifiers.org/edam:format_1208"/>
<sbol:elements>NNNNNNNNNNN</sbol:elements>
<sbol:displayId>BBa_C0062_protein_Sequence1</sbol:displayId>
<sbol:description>LuxR sequence</sbol:description>
<sbol:description>BBa_C0062_protein sequence</sbol:description>
</sbol:Sequence>
<sbol:Sequence rdf:about="BBa_R0040_Sequence1">
<sbol:name>Sequence1</sbol:name>
<sbol:hasNamespace rdf:resource="../igem"/>
<sbol:encoding rdf:resource="https://identifiers.org/edam:format_1207"/>
<sbol:elements>tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcac</sbol:elements>
<sbol:displayId>BBa_R0040_Sequence1</sbol:displayId>
<sbol:description>pTetR sequence</sbol:description>
<sbol:description>BBa_R0040 sequence</sbol:description>
</sbol:Sequence>
<sbol:Sequence rdf:about="BBa_C0062_Sequence1">
<sbol:name>Sequence1</sbol:name>
<sbol:hasNamespace rdf:resource="../igem"/>
<sbol:encoding rdf:resource="https://identifiers.org/edam:format_1207"/>
<sbol:elements>atgaaaaacataaatgccgacgacacatacagaataattaataaaattaaagcttgtagaagcaataatgatattaatcaatgcttatctgatatgactaaaatggtacattgtgaatattatttactcgcgatcatttatcctcattctatggttaaatctgatatttcaatcctagataattaccctaaaaaatggaggcaatattatgatgacgctaatttaataaaatatgatcctatagtagattattctaactccaatcattcaccaattaattggaatatatttgaaaacaatgctgtaaataaaaaatctccaaatgtaattaaagaagcgaaaacatcaggtcttatcactgggtttagtttccctattcatacggctaacaatggcttcggaatgcttagttttgcacattcagaaaaagacaactatatagatagtttatttttacatgcgtgtatgaacataccattaattgttccttctctagttgataattatcgaaaaataaatatagcaaataataaatcaaacaacgatttaaccaaaagagaaaaagaatgtttagcgtgggcatgcgaaggaaaaagctcttgggatatttcaaaaatattaggttgcagtgagcgtactgtcactttccatttaaccaatgcgcaaatgaaactcaatacaacaaaccgctgccaaagtatttctaaagcaattttaacaggagcaattgattgcccatactttaaaaattaataacactgatagtgctagtgtagatcac</sbol:elements>
<sbol:displayId>BBa_C0062_Sequence1</sbol:displayId>
<sbol:description>luxR sequence</sbol:description>
<sbol:description>BBa_C0062 sequence</sbol:description>
</sbol:Sequence>
</rdf:RDF>
14 changes: 7 additions & 7 deletions SBOL3/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.rj
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Expand Up @@ -140,7 +140,7 @@
] ,
"http://sbols.org/v3#description" : [ {
"type" : "literal" ,
"value" : "lux pR sequence"
"value" : "BBa_R0062 sequence"
}
]
}
Expand Down Expand Up @@ -442,7 +442,7 @@
] ,
"http://sbols.org/v3#description" : [ {
"type" : "literal" ,
"value" : "TetR sequence"
"value" : "TetR_protein sequence"
}
]
}
Expand Down Expand Up @@ -518,7 +518,7 @@
] ,
"http://sbols.org/v3#description" : [ {
"type" : "literal" ,
"value" : "LuxR sequence"
"value" : "BBa_C0062_protein sequence"
}
]
}
Expand Down Expand Up @@ -579,7 +579,7 @@
] ,
"http://sbols.org/v3#description" : [ {
"type" : "literal" ,
"value" : "luxR sequence"
"value" : "BBa_C0062 sequence"
}
]
}
Expand Down Expand Up @@ -1264,7 +1264,7 @@
] ,
"http://sbols.org/v3#end" : [ {
"type" : "literal" ,
"value" : "53"
"value" : "54"
}
]
}
Expand Down Expand Up @@ -1353,7 +1353,7 @@
] ,
"http://sbols.org/v3#end" : [ {
"type" : "literal" ,
"value" : "79"
"value" : "80"
}
]
}
Expand Down Expand Up @@ -1471,7 +1471,7 @@
] ,
"http://sbols.org/v3#description" : [ {
"type" : "literal" ,
"value" : "pTetR sequence"
"value" : "BBa_R0040 sequence"
}
]
}
Expand Down
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