NEMoE is an R package implementing a nutrition-aware regularized mixture of experts model, which addresses diet cohort heterogeneity of gut microbiome in certain diseases. Additionally, the implementation can be viewed as a regularized mixture of experts model with an elastic penalty and a binary output. The input can be single-level or multi-level.
To use this package you can :
install it through
remotes::install_github("SydneyBioX/NEMoE")You can find the vignette at our website: https://sydneybiox.github.io/NEMoE/.
If you have any enquiries, especially about running NEMoE model on your own data, then please contact [email protected]. You can also open an issue on GitHub.
Xu, X., Lubomski, M., Holmes, A. J., Sue, C. M., Davis, R. L., Muller, S., & Yang, J. Y. H. (2021). NEMoE: A nutrition aware regularized mixture of experts model addressing diet-cohort heterogeneity of gut microbiota in Parkinson’s disease. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2021.11.10.21266194