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fixed axes tickbox
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@StojiljkovicVetAna
StojiljkovicVetAna committed Sep 7, 2023
1 parent 7b06ff3 commit 9d23f7e
Showing 1 changed file with 69 additions and 6 deletions.
75 changes: 69 additions & 6 deletions src/napari_roidynamics/_widget.py
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Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@

from typing import TYPE_CHECKING

from qtpy.QtWidgets import QPushButton, QWidget, QSpinBox, QVBoxLayout, QComboBox, QLabel, QFileDialog
from qtpy.QtWidgets import QPushButton, QWidget, QSpinBox, QVBoxLayout, QComboBox, QLabel, QFileDialog, QCheckBox, QGridLayout

import matplotlib.pyplot as plt
import numpy as np
Expand All @@ -30,6 +30,8 @@

from cmap import Colormap



if TYPE_CHECKING:
import napari

Expand Down Expand Up @@ -107,7 +109,7 @@ def __init__(self, napari_viewer):
self.drop_manual_combine_label = QLabel('Select the geometry to combine:')
self.btn_manual_mask = QPushButton('Generate manual sector!')


#Plot
self.drop_channel = QComboBox()
self.drop_channel_label = QLabel('4. Select the channel to analyze:')

Expand All @@ -117,17 +119,37 @@ def __init__(self, napari_viewer):
self.btn_plot_int = QPushButton('6. Compute plot')
self.intensity_plot = DataPlotter(self.viewer)

#Save
self.btn_export_plot = QPushButton('7. Save plot data')

self.btn_export_all = QPushButton('Save all combinations')

self.check_axis_all = QCheckBox()
self.check_axis_all.setText('Fixed axis for save all')
self.check_axis_all.setChecked(False)
self.spin_xaxis_set_min = QSpinBox()
self.spin_xaxis_set_min.setRange(0,1000)
self.spin_xaxis_set_min.setValue(0)
self.spin_xaxis_set_max = QSpinBox()
self.spin_xaxis_set_max.setRange(1,100000)
self.spin_xaxis_set_max.setValue(100)
self.spin_xaxis_label = QLabel('Set x axis (min,max)')
self.spin_yaxis_set_min = QSpinBox()
self.spin_yaxis_set_min.setRange(0,1000)
self.spin_yaxis_set_min.setValue(0)
self.spin_yaxis_set_max = QSpinBox()
self.spin_yaxis_set_max.setRange(1,100000)
self.spin_yaxis_set_max.setValue(100)
self.spin_yaxis_label = QLabel('Set y axis (min,max)')

#Layout
self.setLayout(QVBoxLayout())
self.layout().addWidget(self.btn_ROI_label)
self.layout().addWidget(self.btn_ROI)
self.layout().addWidget(self.drop_layers_label)
self.layout().addWidget(self.drop_layers)
self.layout().addWidget(self.tabs_label)
self.layout().addWidget(self.tabs)

self.tabs.add_named_tab('Radial sector', self.spin_sector_width_label)
self.tabs.add_named_tab('Radial sector', self.spin_sector_width)
self.tabs.add_named_tab('Radial sector', self.spin_num_sector_label)
Expand Down Expand Up @@ -156,9 +178,22 @@ def __init__(self, napari_viewer):
self.layout().addWidget(self.drop_sector)
self.layout().addWidget(self.btn_plot_int)
self.layout().addWidget(self.btn_export_plot)
self.layout().addWidget(self.btn_export_all)
self.layout().addWidget(self.check_axis_all)


#Grid axis
self.grid = QWidget()
self.grid.setLayout(QGridLayout())
self.grid.layout().addWidget(self.spin_xaxis_label, 0, 0)

self.grid.layout().addWidget(self.spin_xaxis_set_min, 0, 1)
self.grid.layout().addWidget(self.spin_xaxis_set_max, 0, 2)
self.grid.layout().addWidget(self.spin_yaxis_label, 1, 0)
self.grid.layout().addWidget(self.spin_yaxis_set_min, 1, 1)
self.grid.layout().addWidget(self.spin_yaxis_set_max, 1, 2)

self.layout().addWidget(self.grid)
self.grid.setHidden(True)
self.layout().addWidget(self.btn_export_all)

self._add_connections()

Expand All @@ -182,6 +217,7 @@ def _add_connections(self):

self.btn_plot_int.clicked.connect(self._on_plot)
self.btn_export_plot.clicked.connect(self._export_plot)
self.check_axis_all.toggled.connect(self._on_checked_fixed_axis)
self.btn_export_all.clicked.connect(self._export_all)


Expand Down Expand Up @@ -328,6 +364,8 @@ def _on_plot(self):

data = self.signal_radius.sel(channel=0, roi=0)

plt.style.context('dark_background')

self.intensity_plot.axes.clear()
self.intensity_plot.axes.set_xlabel('Time point')
self.intensity_plot.axes.set_ylabel('Intensity')
Expand Down Expand Up @@ -357,6 +395,24 @@ def _export_plot(self):

imwrite(self.export_folder.joinpath('export_'+self.drop_sector.currentText()+'.tiff'), sector_mask)

def _on_checked_fixed_axis(self, checked):
self.grid.setHidden(False)
if checked == True:
self.spin_xaxis_set_min.setHidden(False)
self.spin_xaxis_set_max.setHidden(False)
self.spin_xaxis_label.setHidden(False)
self.spin_yaxis_set_min.setHidden(False)
self.spin_yaxis_set_max.setHidden(False)
self.spin_yaxis_label.setHidden(False)
else:
self.spin_xaxis_set_min.setHidden(True)
self.spin_xaxis_set_max.setHidden(True)
self.spin_xaxis_label.setHidden(True)
self.spin_yaxis_set_min.setHidden(True)
self.spin_yaxis_set_max.setHidden(True)
self.spin_yaxis_label.setHidden(True)


def _export_all(self):
self.export_folder_loop = Path(str(QFileDialog.getExistingDirectory(self, "Select Directory")))

Expand All @@ -382,9 +438,16 @@ def _export_all(self):
self.intensity_plot.axes.clear()
self.intensity_plot.axes.set_xlabel('Time point')
self.intensity_plot.axes.set_ylabel('Intensity')
self.intensity_plot.axes.tick_params(colors='black')


for i in range(data_loop.shape[1]):
self.intensity_plot.axes.plot(data_loop[:,i], color=self.matplotlib_cm(i+1))

if self.check_axis_all.isChecked() == True:
self.intensity_plot.axes.set_xlim([self.spin_xaxis_set_min.value(), self.spin_xaxis_set_max.value()])
self.intensity_plot.axes.set_ylim([self.spin_yaxis_set_min.value(), self.spin_yaxis_set_max.value()])
else:
pass

self.intensity_plot.canvas.figure.savefig(self.export_folder_loop.joinpath('export'+self.drop_channel.itemText(c)+'_'+self.drop_sector.itemText(m)+'_plot.png'))

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