This repository contains the benchmarking workflow that can be used to assess performance of germline variant calling pipelines. It contains the benchmarking workflow file in the yaml format, relevant scripts and result files based on testing with GIAB samples using our in-house workflow engine called Loom (https://github.com/StanfordBioinformatics/loom).
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StanfordBioinformatics/stanford-benchmarking-workflows
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