GitHub - StanfordBioinformatics/gbsc_utils: DNXNexus Integration Code

Miscellaneous utilities for Stanford Genetics Bioinformatics Service Center

Name		Name	Last commit message	Last commit date
Latest commit History 254 Commits
SequencingRuns		SequencingRuns
barcodecounter		barcodecounter
bash		bash
bina_utils		bina_utils
bwa_pipeline		bwa_pipeline
convert_samplesheet		convert_samplesheet
coverageReporter		coverageReporter
dnanexus		dnanexus
dnanexus_handoff		dnanexus_handoff
fasta		fasta
fastq		fastq
igvhelper		igvhelper
illumina		illumina
mandrill		mandrill
mini_genome		mini_genome
ogetools		ogetools
pipulines		pipulines
remove_missing_tiles		remove_missing_tiles
reverse_complement		reverse_complement
single_cell_rna_seq		single_cell_rna_seq
sjm		sjm
uhts		uhts
.gitignore		.gitignore
README.md		README.md
__init__.py		__init__.py
confparse.py		confparse.py
convertCRtoLF.py		convertCRtoLF.py
expand_dbgap_data.sh		expand_dbgap_data.sh
fileSetOpts.py		fileSetOpts.py
findFiles.py		findFiles.py
findLinesWithIncorrectFields.py		findLinesWithIncorrectFields.py
gbsc_utils.py		gbsc_utils.py
nucleic.py		nucleic.py
office_hours_dev_analyst.py		office_hours_dev_analyst.py
office_hours_rotation.py		office_hours_rotation.py
print_every_other_line.py		print_every_other_line.py
rmFileFromRundir.sh		rmFileFromRundir.sh
transferFields.py		transferFields.py

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