Version v0.3.x of the pipeline is compatible with the descriptions and data in:
SM Karst, RM Ziels, RH Kirkegaard, EA Sørensen, D. McDonald, Q Zhu, R Knight, & M Albertsen. (2020). Enabling high-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing. bioRxiv, 6459039.
Bug fixes
- Re-introduce Racon window trimming for pacbio_pipeline. No trimming results in higher error rate.
Minor changes
- Updated readme and example analysis.