R code to analyse RNA sequencing data for "MR elastography identifies regions of extracellular matrix reorganization associated with shorter survival in glioblastoma patients", Neurooncol Adv. 2023 Mar 5;5(1):vdad021. doi: 10.1093/noajnl/vdad021.
Run "RNAseq-Analysis_Stiffness_GBM_FINAL.Rmd" to recreate Differential expression (DESeq2), heatmap, Volcano plot, Cluster analysis PCA, PLS-DA and survival analysis.
All code written by Skarphedinn Halldorsson