Minimal integration test

Unify output handlers and regular tools, improve exception management, major refactor #314

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Run time

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Job	Run time
test (3.10, ubuntu-latest)	1m 15s
test (3.10, macos-latest)	1m 2s
test (3.10, windows-latest)	3m 29s
test (3.11, ubuntu-latest)	1m 23s
test (3.11, macos-latest)	54s
test (3.11, windows-latest)	3m 5s
test (3.12, ubuntu-latest)	1m 55s
test (3.12, macos-latest)	1m 21s
test (3.12, windows-latest)	4m 12s
	18m 36s