Enhanced the read_copynumber_seqz() to include minor copy number. (…

…Thanks to yancey)
ShixiangWang · Dec 15, 2021 · e55cb33 · e55cb33
1 parent 6534a88
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diff --git a/CRAN-RELEASE b/CRAN-RELEASE
@@ -1,2 +1,2 @@
-This package was submitted to CRAN on 2021-10-29.
-Once it is accepted, delete this file and tag the release (commit 98296e4).
+This package was submitted to CRAN on 2021-12-15.
+Once it is accepted, delete this file and tag the release (commit 6534a88).
diff --git a/NEWS.md b/NEWS.md
@@ -1,5 +1,6 @@
 # sigminer 2.1.2
 
+- Enhanced the `read_copynumber_seqz()` to include minor copy number. (Thanks to yancey)
 - Added input `range` check in `sig_estimate()`. (#391)
 
 # sigminer 2.1.1

diff --git a/R/read_copynumber_seqz.R b/R/read_copynumber_seqz.R
@@ -27,9 +27,9 @@ read_copynumber_seqz <- function(target_dir, return_df = FALSE, ...) {
     message("Processing ", y)
     df <- data.table::fread(x, data.table = FALSE)
     df <- df %>%
-      dplyr::select(c("chromosome", "start.pos", "end.pos", "CNt")) %>%
+      dplyr::select(c("chromosome", "start.pos", "end.pos", "CNt", "B")) %>%
       dplyr::mutate(sample = y)
-    colnames(df) <- c("Chromosome", "Start.bp", "End.bp", "modal_cn", "sample")
+    colnames(df) <- c("Chromosome", "Start.bp", "End.bp", "modal_cn", "minor_cn", "sample")
     df
   })
 

diff --git a/docs/404.html b/docs/404.html