DESCRIPTION

Package: exprAnalysis
Type: Package
Title: A package for analysing RNA-seq and expression array data
Version: 0.1.0
Author: person("Shirin", "Glander", email = "shirin.glander@wwu.de", role = c("aut", "cre"))
Description: This package combines tools and functions for RNA-seq and expression array data analysis, like PCA, heatmaps, GO and KEGG enrichment analysis in human or mouse data.
License: GPL-3
Maintainer: Shirin Glander <shirin.glander@wwu.de>
LazyData: TRUE
Imports:
    AnnotationDbi,
    arrayQualityMetrics,
    beadarray,
    Biobase,
    dynamicTreeCut,
    flashClust,
    pcaGoPromoter,
    limma,
    matrixStats,
    org.Hs.eg.db,
    pathview,
    RColorBrewer,
    scales,
    SummarizedExperiment,
    sva,
    WGCNA
Depends:
    R (>= 2.10),
Suggests:
    BiocParallel,
    devtools,
    dplyr,
    DESeq2,
    GenomicAlignments,
    GenomicFeatures,
    GO.db,
    gplots,
    impute,
    knitr,
    org.Mm.eg.db,
    preprocessCore,
    rmarkdown,
    Rsamtools,
    roxygen2,
    testthat
RoxygenNote: 5.0.1
VignetteBuilder: knitr
URL: https://github.com/ShirinG/exprAnalysis
BugReports: https://github.com/ShirinG/exprAnalysis/issues