update conda env #432
Workflow file for this run
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| name: CI | |
| on: | |
| # GitHub has started calling new repo's first branch "main" https://github.com/github/renaming | |
| # Existing codes likely still have "master" as the primary branch | |
| # Both are tracked here to keep legacy and new codes working | |
| push: | |
| branches: | |
| - "*" | |
| - "**" | |
| pull_request: | |
| branches: | |
| - "master" | |
| - "update" | |
| schedule: | |
| # Nightly tests run on master by default: | |
| # Scheduled workflows run on the latest commit on the default or base branch. | |
| # (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule) | |
| - cron: "0 0 * * *" | |
| jobs: | |
| test: | |
| name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.8', '3.9', '3.10'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Additional info about the build | |
| shell: bash | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| # More info on options: https://github.com/conda-incubator/setup-miniconda | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: devtools/conda-envs/test_env.yaml | |
| activate-environment: test | |
| auto-update-conda: false | |
| auto-activate-base: false | |
| show-channel-urls: true | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Testing Dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install -U pytest pytest-cov codecov | |
| - name: Install package | |
| # conda setup requires this special shell | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install -e . --no-deps -vvv | |
| conda list | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| ls -a despasito/equations_of_state/saft/compiled_modules | |
| pytest -vvv --cov=despasito --cov-report=xml --color=yes despasito/tests/ | |
| - name: CodeCov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| name: codecov-${{ matrix.os }}-py${{ matrix.python-version }} | |
| - name: Flake8 | |
| run: | | |
| conda install flake8 | |
| flake8 despasito --count --max-complexity=10 --max-line-length=79 --show-source --statistics | |
| paper: | |
| runs-on: ubuntu-latest | |
| name: Paper Draft | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Build draft PDF | |
| uses: openjournals/openjournals-draft-action@master | |
| with: | |
| journal: joss | |
| # This should be the path to the paper within your repo. | |
| paper-path: paper/paper.md | |
| - name: Upload | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: paper | |
| # This is the output path where Pandoc will write the compiled | |
| # PDF. Note, this should be the same directory as the input | |
| # paper.md | |
| path: paper/paper.pdf |