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update generated doc
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jkiang13 committed Jul 8, 2021
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2 changes: 1 addition & 1 deletion docs/build/html/.buildinfo
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@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 9c1bb04af5f147db0da20ac6db06bb18
config: 69f4dc78a57977eb1ec3013f1b594b9e
tags: 645f666f9bcd5a90fca523b33c5a78b7
23 changes: 11 additions & 12 deletions docs/build/html/Activity.html
Original file line number Diff line number Diff line change
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<html>
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Provenance &#8212; Synapse Python Client 2.3.1 documentation</title>
<link rel="stylesheet" href="_static/custom.css" type="text/css" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Provenance &#8212; Synapse Python Client 2.4.0 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/custom.css" type="text/css" />

<script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script src="_static/jquery.js"></script>
<script src="_static/underscore.js"></script>
<script src="_static/doctools.js"></script>
<script src="_static/language_data.js"></script>
<script src="_static/bizstyle.js"></script>
<link rel="shortcut icon" href="_static/favicon.png"/>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Annotations" href="Annotations.html" />
<link rel="prev" title="Evaluations" href="Evaluation.html" />
<meta name="viewport" content="width=device-width,initial-scale=1.0">
<meta name="viewport" content="width=device-width,initial-scale=1.0" />
<!--[if lt IE 9]>
<script src="_static/css3-mediaqueries.js"></script>
<![endif]-->
Expand All @@ -46,7 +45,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="Evaluation.html" title="Evaluations"
accesskey="P">previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 2.3.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 2.4.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Provenance</a></li>
</ul>
</div>
Expand Down Expand Up @@ -109,7 +108,7 @@ <h2>Recording data source<a class="headerlink" href="#recording-data-source" tit
<h2>Activity<a class="headerlink" href="#activity" title="Permalink to this headline"></a></h2>
<dl class="py class">
<dt id="synapseclient.activity.Activity">
<em class="property">class </em><code class="sig-prename descclassname">synapseclient.activity.</code><code class="sig-name descname">Activity</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">description</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">used</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">executed</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">data</span><span class="o">=</span><span class="default_value">{}</span></em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.activity.Activity" title="Permalink to this definition"></a></dt>
<em class="property"><span class="pre">class</span> </em><code class="sig-prename descclassname"><span class="pre">synapseclient.activity.</span></code><code class="sig-name descname"><span class="pre">Activity</span></code><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">description</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">used</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">executed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">data</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">{}</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.activity.Activity" title="Permalink to this definition"></a></dt>
<dd><p>Represents the provenance of a Synapse Entity.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
Expand All @@ -135,14 +134,14 @@ <h2>Activity<a class="headerlink" href="#activity" title="Permalink to this head
<p>See also: The <a class="reference external" href="http://www.w3.org/TR/prov-o/">W3C’s provenance ontology</a></p>
<dl class="py method">
<dt id="synapseclient.activity.Activity.executed">
<code class="sig-name descname">executed</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">target</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">targetVersion</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">url</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.activity.Activity.executed" title="Permalink to this definition"></a></dt>
<code class="sig-name descname"><span class="pre">executed</span></code><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">target</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">targetVersion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">url</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.activity.Activity.executed" title="Permalink to this definition"></a></dt>
<dd><p>Add a code resource that was executed during the activity.
See <a class="reference internal" href="#synapseclient.activity.Activity.used" title="synapseclient.activity.Activity.used"><code class="xref py py-func docutils literal notranslate"><span class="pre">synapseclient.activity.Activity.used()</span></code></a></p>
</dd></dl>

<dl class="py method">
<dt id="synapseclient.activity.Activity.used">
<code class="sig-name descname">used</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">target</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">targetVersion</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">wasExecuted</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">url</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">name</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.activity.Activity.used" title="Permalink to this definition"></a></dt>
<code class="sig-name descname"><span class="pre">used</span></code><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">target</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">targetVersion</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">wasExecuted</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">url</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.activity.Activity.used" title="Permalink to this definition"></a></dt>
<dd><p>Add a resource used by the activity.</p>
<p>This method tries to be as permissive as possible. It accepts a string which might be a synapse ID or a URL,
a synapse entity, a UsedEntity or UsedURL dictionary or a list containing any combination of these.</p>
Expand Down Expand Up @@ -243,14 +242,14 @@ <h3>Navigation</h3>
<li class="right" >
<a href="Evaluation.html" title="Evaluations"
>previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 2.3.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 2.4.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Provenance</a></li>
</ul>
</div>
<div class="footer">
&copy; <a href="http://sagebase.org/">Sage Bionetworks</a>.
Last updated on Apr 13, 2021.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 3.1.2.
Last updated on Jul 08, 2021.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 3.5.4.
</div>
<script type="text/javascript">
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
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21 changes: 10 additions & 11 deletions docs/build/html/Annotations.html
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Expand Up @@ -5,23 +5,22 @@
<html>
<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>Annotations &#8212; Synapse Python Client 2.3.1 documentation</title>
<link rel="stylesheet" href="_static/custom.css" type="text/css" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Annotations &#8212; Synapse Python Client 2.4.0 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/custom.css" type="text/css" />

<script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script src="_static/jquery.js"></script>
<script src="_static/underscore.js"></script>
<script src="_static/doctools.js"></script>
<script src="_static/language_data.js"></script>
<script src="_static/bizstyle.js"></script>
<link rel="shortcut icon" href="_static/favicon.png"/>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Wiki" href="Wiki.html" />
<link rel="prev" title="Provenance" href="Activity.html" />
<meta name="viewport" content="width=device-width,initial-scale=1.0">
<meta name="viewport" content="width=device-width,initial-scale=1.0" />
<!--[if lt IE 9]>
<script src="_static/css3-mediaqueries.js"></script>
<![endif]-->
Expand All @@ -46,7 +45,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="Activity.html" title="Provenance"
accesskey="P">previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 2.3.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 2.4.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Annotations</a></li>
</ul>
</div>
Expand Down Expand Up @@ -102,12 +101,12 @@ <h2>Implementation details<a class="headerlink" href="#implementation-details" t
<h2>Classes<a class="headerlink" href="#classes" title="Permalink to this headline"></a></h2>
<dl class="py class">
<dt id="synapseclient.annotations.Annotations">
<em class="property">class </em><code class="sig-prename descclassname">synapseclient.annotations.</code><code class="sig-name descname">Annotations</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">id</span><span class="p">:</span> <span class="n">Union<span class="p">[</span>str<span class="p">, </span>int<span class="p">, </span><a class="reference internal" href="Entity.html#synapseclient.entity.Entity" title="synapseclient.entity.Entity">synapseclient.entity.Entity</a><span class="p">]</span></span></em>, <em class="sig-param"><span class="n">etag</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">values</span><span class="p">:</span> <span class="n">Dict</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.annotations.Annotations" title="Permalink to this definition"></a></dt>
<em class="property"><span class="pre">class</span> </em><code class="sig-prename descclassname"><span class="pre">synapseclient.annotations.</span></code><code class="sig-name descname"><span class="pre">Annotations</span></code><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Union</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">,</span> </span><span class="pre">int</span><span class="p"><span class="pre">,</span> </span><a class="reference internal" href="Entity.html#synapseclient.entity.Entity" title="synapseclient.entity.Entity"><span class="pre">synapseclient.entity.Entity</span></a><span class="p"><span class="pre">]</span></span></span></em>, <em class="sig-param"><span class="n"><span class="pre">etag</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">values</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">Dict</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.annotations.Annotations" title="Permalink to this definition"></a></dt>
<dd><p>Represent Synapse Entity annotations as a flat dictionary with the system assigned properties id, etag
as object attributes.</p>
<dl class="py method">
<dt id="synapseclient.annotations.Annotations.__init__">
<code class="sig-name descname">__init__</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">id</span><span class="p">:</span> <span class="n">Union<span class="p">[</span>str<span class="p">, </span>int<span class="p">, </span><a class="reference internal" href="Entity.html#synapseclient.entity.Entity" title="synapseclient.entity.Entity">synapseclient.entity.Entity</a><span class="p">]</span></span></em>, <em class="sig-param"><span class="n">etag</span><span class="p">:</span> <span class="n">str</span></em>, <em class="sig-param"><span class="n">values</span><span class="p">:</span> <span class="n">Dict</span> <span class="o">=</span> <span class="default_value">None</span></em>, <em class="sig-param"><span class="o">**</span><span class="n">kwargs</span></em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.annotations.Annotations.__init__" title="Permalink to this definition"></a></dt>
<code class="sig-name descname"><span class="pre">__init__</span></code><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">id</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Union</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">,</span> </span><span class="pre">int</span><span class="p"><span class="pre">,</span> </span><a class="reference internal" href="Entity.html#synapseclient.entity.Entity" title="synapseclient.entity.Entity"><span class="pre">synapseclient.entity.Entity</span></a><span class="p"><span class="pre">]</span></span></span></em>, <em class="sig-param"><span class="n"><span class="pre">etag</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">str</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">values</span></span><span class="p"><span class="pre">:</span></span> <span class="n"><span class="pre">Optional</span><span class="p"><span class="pre">[</span></span><span class="pre">Dict</span><span class="p"><span class="pre">]</span></span></span> <span class="o"><span class="pre">=</span></span> <span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.annotations.Annotations.__init__" title="Permalink to this definition"></a></dt>
<dd><p>Create an Annotations object taking key value pairs from a dictionary or from keyword arguments.
System properties id, etag, creationDate and uri become attributes of the object.</p>
<dl class="field-list simple">
Expand Down Expand Up @@ -197,14 +196,14 @@ <h3>Navigation</h3>
<li class="right" >
<a href="Activity.html" title="Provenance"
>previous</a> |</li>
<li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 2.3.1 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 2.4.0 documentation</a> &#187;</li>
<li class="nav-item nav-item-this"><a href="">Annotations</a></li>
</ul>
</div>
<div class="footer">
&copy; <a href="http://sagebase.org/">Sage Bionetworks</a>.
Last updated on Apr 13, 2021.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 3.1.2.
Last updated on Jul 08, 2021.
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 3.5.4.
</div>
<script type="text/javascript">
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
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