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Update sage-publication.jsonld
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@cconrad8
cconrad8 authored Oct 31, 2024
1 parent d0ff227 commit ac01a89
Showing 1 changed file with 257 additions and 138 deletions.
395 changes: 257 additions & 138 deletions draft-data-models/sage-publication/sage-publication.jsonld
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Original file line number Diff line number Diff line change
@@ -1,141 +1,260 @@
{
"@context": {
"@vocab": "https://schema.org/",
"sms": "https://example.com/sms#",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#"
},
"@graph": [
{
"@id": "doi",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Text",
"rdfs:comment": "Digital Object Identifier for the publication",
"sms:displayName": "DOI",
"rdfs:label": "DOI",
"@type": "LargeText",
"sms:required": true,
"rdfs:subClassOf": "Text"
"@context": {
"schema": "http://schema.org/",
"@vocab": "https://schema.org/",
"sms": "https://example.com/sms#",
"rdfs": "http://www.w3.org/2000/01/rdf-schema#"
},
{
"@id": "diseaseFocus",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Text",
"rdfs:comment": "The disease focus of the publication",
"sms:displayName": "Disease Focus",
"rdfs:label": "Disease Focus",
"@type": "String",
"sms:required": true,
"rdfs:subClassOf": "Text"
},
{
"@id": "journal",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Text",
"rdfs:comment": "The journal where the article was published",
"sms:displayName": "Journal",
"rdfs:label": "Journal",
"@type": "String",
"sms:required": true,
"rdfs:subClassOf": "Text"
},
{
"@id": "title",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Text",
"rdfs:comment": "The title of the publication",
"sms:displayName": "Title",
"rdfs:label": "Title",
"@type": "LargeText",
"sms:required": true,
"rdfs:subClassOf": "Text"
},
{
"@id": "year",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Integer",
"rdfs:comment": "The publication year",
"sms:displayName": "Year",
"rdfs:label": "Year",
"@type": "Integer",
"sms:required": true,
"rdfs:subClassOf": "Integer"
},
{
"@id": "pmid",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Text",
"rdfs:comment": "PubMed ID of the publication",
"sms:displayName": "PMID",
"rdfs:label": "PMID",
"@type": "String",
"sms:required": false,
"rdfs:subClassOf": "Text"
},
{
"@id": "author",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Text",
"rdfs:comment": "List of authors",
"sms:displayName": "Author",
"rdfs:label": "Author",
"@type": "StringList",
"sms:required": true,
"rdfs:subClassOf": "Text"
},
{
"@id": "manifestation",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Text",
"rdfs:comment": "Manifestations related to the publication",
"sms:displayName": "Manifestation",
"rdfs:label": "Manifestation",
"@type": "StringList",
"sms:required": false,
"rdfs:subClassOf": "Text"
},
{
"@id": "fundingAgency",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Text",
"rdfs:comment": "Funding agencies supporting the publication",
"sms:displayName": "Funding Agency",
"rdfs:label": "Funding Agency",
"@type": "StringList",
"sms:required": false,
"rdfs:subClassOf": "Text"
},
{
"@id": "studyId",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Text",
"rdfs:comment": "Study ID associated with the publication",
"sms:displayName": "Study ID",
"rdfs:label": "Study ID",
"@type": "StringList",
"sms:required": false,
"rdfs:subClassOf": "Text"
},
{
"@id": "studyName",
"sms:requiresDependency": [],
"sms:validationRules": [],
"schema:rangeIncludes": "Text",
"rdfs:comment": "Study name associated with the publication",
"sms:displayName": "Study Name",
"rdfs:label": "Study Name",
"@type": "StringList",
"sms:required": false,
"rdfs:subClassOf": "Text"
}
]
"@graph": [
{
"@id": "doi",
"sms:displayName": "DOI",
"rdfs:comment": "Digital Object Identifier for the publication",
"@type": "class",
"sms:required": "True",
"rdfs:label": "DOI",
"mc2:displayName": "Publication Doi",
"mc2:included": true,
"nf:included": true,
"nf:displayName": "DOI"
},
{
"@id": "diseaseFocus",
"sms:displayName": "Disease Focus",
"rdfs:comment": "The disease focus of the publication",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Disease Focus",
"mc2:included": false,
"nf:included": true,
"nf:displayName": "Disease Focus"
},
{
"@id": "journal",
"sms:displayName": "Journal",
"rdfs:comment": "The journal where the article was published",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Journal",
"mc2:displayName": "Publication Journal",
"mc2:included": true,
"nf:included": true,
"nf:displayName": "Journal"
},
{
"@id": "title",
"sms:displayName": "Title",
"rdfs:comment": "The title of the publication",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Title",
"mc2:displayName": "Publication Title",
"mc2:included": true,
"nf:included": true,
"nf:displayName": "Title"
},
{
"@id": "year",
"sms:displayName": "Year",
"rdfs:comment": "The publication year",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Year",
"mc2:displayName": "Publication Year",
"mc2:included": true,
"nf:included": true,
"nf:displayName": "Year"
},
{
"@id": "pmid",
"sms:displayName": "PMID",
"rdfs:comment": "PubMed ID of the publication",
"@type": "class",
"sms:required": "False",
"rdfs:label": "PMID",
"mc2:included": false,
"nf:included": true,
"nf:displayName": "PMID"
},
{
"@id": "author",
"sms:displayName": "Author",
"rdfs:comment": "List of authors",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Author",
"mc2:displayName": "Publication Author",
"mc2:included": true,
"nf:included": true,
"nf:displayName": "Author"
},
{
"@id": "manifestation",
"sms:displayName": "Manifestation",
"rdfs:comment": "Manifestations related to the publication",
"@type": "class",
"sms:required": "False",
"rdfs:label": "Manifestation",
"mc2:included": false,
"nf:included": true,
"nf:displayName": "Manifestation"
},
{
"@id": "fundingAgency",
"sms:displayName": "Funding Agency",
"rdfs:comment": "Funding agencies supporting the publication",
"@type": "class",
"sms:required": "False",
"rdfs:label": "Funding Agency",
"mc2:included": false,
"nf:included": true,
"nf:displayName": "Funding Agency"
},
{
"@id": "studyId",
"sms:displayName": "Study ID",
"rdfs:comment": "Study ID associated with the publication",
"@type": "class",
"sms:required": "False",
"rdfs:label": "Study ID",
"mc2:included": false,
"nf:included": true,
"nf:displayName": "Study ID"
},
{
"@id": "studyName",
"sms:displayName": "Study Name",
"rdfs:comment": "Study name associated with the publication",
"@type": "class",
"sms:required": "False",
"rdfs:label": "Study Name",
"mc2:included": false,
"nf:included": true,
"nf:displayName": "Study Name"
},
{
"@id": "accessibility",
"sms:displayName": "Accessibility",
"rdfs:comment": "Whether there are non-monetary restrictions on accessing the publication.",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Accessibility",
"mc2:displayName": "Publication Accessibility",
"mc2:included": true,
"nf:included": true,
"nf:displayName": "Accessibility"
},
{
"@id": "assay",
"sms:displayName": "Assay",
"rdfs:comment": "Assay(s) associated with the publication. Multiple values permitted, comma separated.",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Assay",
"mc2:displayName": "Publication Assay",
"mc2:included": true,
"nf:included": true,
"nf:displayName": "Assay"
},
{
"@id": "keywords",
"sms:displayName": "Keywords",
"rdfs:comment": "Keywords associated with the publication. Multiple values permitted, comma separated.",
"@type": "class",
"sms:required": "False",
"rdfs:label": "Keywords",
"mc2:displayName": "Publication Keywords",
"mc2:included": true,
"nf:included": true,
"nf:displayName": "Keywords"
},
{
"@id": "tumorType",
"sms:displayName": "Tumor Type",
"rdfs:comment": "Tumor type(s) associated with the publication. Multiple values permitted, comma separated.",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Tumor Type",
"mc2:displayName": "Publication Tumor Type",
"mc2:included": true,
"nf:included": false
},
{
"@id": "abstract",
"sms:displayName": "Abstract",
"rdfs:comment": "The abstract of the publication",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Abstract",
"mc2:displayName": "Publication Abstract",
"mc2:included": true,
"nf:included": false
},
{
"@id": "tissue",
"sms:displayName": "Tissue",
"rdfs:comment": "Tissue type(s) associated with the publication. Multiple values permitted, comma separated.",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Tissue",
"mc2:displayName": "Publication Tissue",
"mc2:included": true,
"nf:included": false
},
{
"@id": "view",
"sms:displayName": "View",
"rdfs:comment": "The denormalized manifest for publication submission.",
"@type": "class",
"sms:required": "False",
"rdfs:label": "View",
"mc2:displayName": "Publication View",
"mc2:included": true,
"nf:included": false
},
{
"@id": "url",
"sms:displayName": "URL",
"rdfs:comment": "PubMed URL for the publication",
"@type": "class",
"sms:required": "True",
"rdfs:label": "URL",
"mc2:displayName": "Publication Url",
"mc2:included": true,
"nf:included": false
},
{
"@id": "datasetAlias",
"sms:displayName": "Dataset Alias",
"rdfs:comment": "A list of the dataset aliases (e.g., GEO identifier such as GSE12345, or a DOI). Multiple values permitted, comma separated.",
"@type": "class",
"sms:required": "False",
"rdfs:label": "Dataset Alias",
"mc2:displayName": "Publication Dataset Alias",
"mc2:included": true,
"nf:included": false
},
{
"@id": "grantNumber",
"sms:displayName": "Grant Number",
"rdfs:comment": "Relevant grant number associated with the publication's development. Multiple values permitted, comma separated.",
"@type": "class",
"sms:required": "True",
"rdfs:label": "Grant Number",
"mc2:displayName": "Publication Grant Number",
"mc2:included": true,
"nf:included": false
},
{
"@id": "viewId",
"sms:displayName": "View_id",
"rdfs:comment": "A unique primary key that enables record updates using schematic.",
"@type": "class",
"sms:required": "True",
"rdfs:label": "View_id",
"mc2:displayName": "Publication View_id",
"mc2:included": true,
"nf:included": false
}
]
}

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