v16.5.0

Highlights

• Improved tracking of validation status and error tracking

  • There is now a version column available for tracking down files that failed validation

• Improved testing infrastructure

  • Set up staging pipeline for testing changes
  • Added integration tests to GitHub Actions workflow
  • Fixed issue with building Docker image versions for package releases

Validation Rule Updates

• [GEN-1545] Removed GERMLINE from valid SV_STATUS values to prevent release of germline variants (@danlu1 in #579)
• [GEN-1021] Added validation to prevent release of samples with non-targeted sequencing or WXS library strategy values (@danlu1 in #580)

Data Processing Changes

• [GEN-1622] Removed sample class filter to enable release of cfDNA samples (@danlu1 in #581)
• [GEN-1704] Filtered out germline variants from SV files before release (@rxu17 in #583)

Technical Features

• [GEN-1330] Set up staging pipeline for testing changes (@rxu17 in #568)
• [GEN-703] Added version number to validation status and error tracking tables (@thomasyu888 in #574)
• [GEN-1653] Added integration tests to GitHub Actions workflow (@rxu17 in #582)

Bug Fixes

• [GEN-1442] Fixed issue with building Docker image versions for package releases (@rxu17 in #584)

Tech Debt

• [GEN-1325] Removed section on flagged mutations from dashboard summary (@thomasyu888 in #569)
• [GEN-1326] Removed panel overlap charts from dashboard summary (@thomasyu888 in #570)
• [GEN-1299] Aligned column names in dashboard (@thomasyu888 in #571)

Documentation Changes

• Added details about maf file validation (@rxu17 in #577)
• Added details about germline variant filtering during consortium release (@rxu17 in #578)

Full Changelog: v16.4.0...v16.5.0