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ARTIC nanopore protocol for nCoV2019 novel coronavirus

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artic-ncov2019

Implementation of ARTIC bioinformatics platform for nanopore sequencing of nCoV2019 novel coronavirus. This version relies on Snakemake to execute https://github.com/artic-network/fieldbioinformatics post-sequencing analysis pipeline. Whilst also providing some convenience scripts to setup for rampart and post-sequencing analysis.

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ARTIC nanopore protocol for nCoV2019 novel coronavirus

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  • Python 97.2%
  • Shell 2.8%