add citations

README.md

@@ -56,6 +56,17 @@ To locally render documentation:
 - Build the HTML `make html`
 - Open the `build/html/README.html` file in your browser
 
+## Cite
+
+AMDirT has been published in F1000 with the following DOI: [10.12688/f1000research.134798.2](https://doi.org/10.12688/f1000research.134798.2). You can cite it like so:
+
+```
+Borry M, Forsythe A, Andrades Valtueña A et al. Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT. F1000Research 2024, 12:926
+```
+
+A bibtex file is also available here: [amdirt.bib](amdirt.bib)
+
+
 ## More information
 
 For more information, please see the AMDirT Documentation

amdirt.bib

@@ -0,0 +1,15 @@
+@misc{borryFacilitatingAccessibleRapid2024,
+  title = {Facilitating Accessible, Rapid, and Appropriate Processing of Ancient Metagenomic Data with {{AMDirT}}},
+  author = {Borry, Maxime and Forsythe, Adrian and Valtue{\~n}a, Aida Andrades and H{\"u}bner, Alexander and Ibrahim, Anan and Quagliariello, Andrea and White, Anna E. and Kocher, Arthur and V{\aa}gene‬, {\AA}shild J. and Bartholdy, Bj{\o}rn Peare and Spur{\=i}te, Di{\=a}na and {Ponce-Soto}, Gabriel Yaxal and Neumann, Gunnar and Huang, I.-Ting and Light, Ian and Velsko, Irina M. and Jackson, Iseult and Frangenberg, Jasmin and Serrano, Javier G. and Fumey, Julien and {\"O}zdo{\u g}an, Kadir T. and Blevins, Kelly E. and Daly, Kevin G. and Lopopolo, Maria and Moraitou, Markella and Michel, Megan and van Os, Meriam and {Bravo-Lopez}, Miriam J. and Sarhan, Mohamed S. and Dagtas, Nihan D. and Oskolkov, Nikolay and Smith, Olivia S. and Lebrasseur, Oph{\'e}lie and Rozwalak, Piotr and Eisenhofer, Raphael and Wasef, Sally and Ramachandran, Shreya L. and Vanghi, Valentina and Warinner, Christina and Yates, James A. Fellows},
+  year = {2024},
+  month = may,
+  number = {12:926},
+  eprint = {12:926},
+  publisher = {F1000Research},
+  doi = {10.12688/f1000research.134798.2},
+  urldate = {2024-09-24},
+  archiveprefix = {F1000Research},
+  copyright = {http://creativecommons.org/licenses/by/4.0/},
+  langid = {english},
+  keywords = {aDNA,environmental,FAIR data,metadata,metagenomics,microbial,microbiome,palaeogenomics}
+}