v3.2

• Import lab protocol using OPIL data model using "Import Experimental Protocol Template"
• Generate and run experimental designs described in the OPIL data model using "Run Experiment -> with OPIL"

v3.1.2

Bug fixes related to adding reagent and media values to a measurement.

v3.1.1

recover features for link and link all terms when adding terms to synbiohub and replaced pysbol3.Measure to opil.Measure

v3.1

• allowing users to export measurements and controls by selecting Generate OPIL from Intent Parser add-on menu. Included in this feature is validation fo parameter values to ensure that values provided in an Intent Parser parameter table template are valid values supported in the selected experimental protocol. An Experiment Request document must have an Intent Parser lab table, measurement table, and a parameter table template filled out in order to successfully generate opil.

• support for 2 types of parameter table templates. Table template 1 is used to export a structured request whereas table template 2 is used for exporting opil. Table template 2 is autogenerated from Intent Parser by selecting Create table templates -> Parameters from the drop down menu item. Going forward, table template 1 requires manual creation.

• allowing access to parameter information for a lab’s protocol by selecting Intent Parser add-on menu item Help->Tables->Parameters. Information reported in the pop-up will vary depending on what lab name is specified from Intent Parser’s lab table and the name of a protocol described from Intent Parser’s parameter table template.
  Information reported in the pop dialog include:

  • names of required and optional parameters
  • description about a parameter
  • acceptable values that a parameter is allowed to have

• providing an entrypoint for getting strateos protocol ID. This is found by selecting Intent Parser add-on menu item Help->Tables->Parameters

v3.0

• upgrade Intent Parser into a flask application
• created a swagger ui interface to document Intent Parser as an API.
• bug fixes related to calling Analyze terms, Suggest Additions by Spelling, Add to SynBioHub

v2.10.1

update execution fields for test_mode to False and submit to True

v2.10

Strain validation, OPIL support for Parameters table, Measurement table expansion to include Number of Negative Controls, Use RNAse Inhibitor in Reaction, DNA Reaction Concentration, and Template DNA

v2.9

• report required and optional fields for IP tables through the form of a sidebar. This feature is accessible from IP's drop down menu by navigating to Help -> Table and then selecting the desired table type that you would like to get information for.
• bug fixes related to processing the contents from a parameter table.
• bug fixes related to advancing cursor when running Analyze from top feature.
• fix table index value when inserting a controls table to an ER document.
• specification of containers to use for each experiment by inserting "Container Search String" as a field to a parameter table.
• provide a human readable text when specifying protocol fields from a parameter table:
  • Plate Size
  • Plate Number
  • Container Search String
  • Strain Property
  • XPlan Path
  • Protocol ID
  • Experiment Reference URL For XPlan
  • XPlan Base Directory

v2.8post

Resolved #241