Experimental branch - Update Eukaryotic functions and testing for python 3.8 #117
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…unction with chromosomal separation of genes, and function to read in yeast gff files
Update with eukaryotic functions - test on experimental branch for precommit issues with blacken docs
Experimental branch - switch upstream to experimental branch updates I performed on SBRG/pymodulon
Add additional arguments to ensure functionality in python 3.8
…ing jinja2 config
Fix issues in plotting functions and attempt to fix doc issues by adding jinja2 config
RegulonDB works but has long loading times which cause linkcheck to fail as of 8/22/24
Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## master #117 +/- ##
==========================================
- Coverage 54.23% 51.68% -2.55%
==========================================
Files 17 17
Lines 3321 3500 +179
Branches 642 687 +45
==========================================
+ Hits 1801 1809 +8
- Misses 1395 1564 +169
- Partials 125 127 +2 ☔ View full report in Codecov by Sentry. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Removed Github testing for py 3.6, deprecated testing modules