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CI-CD #42

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CI-CD

CI-CD #42

Workflow file for this run

.github/workflows/main.yml at a1b42cc
name: CI-CD
on:
create:
tags:
- '^v[0-9]+.[0-9]+.[0-9]+(?:.dev[0-9])?$'
workflow_dispatch:
inputs:
py-act:
description: 'Python 3.X for GH Actions'
required: false
default: '3.8'
pip_opts:
description: Install options (pip)
required: false
default: '--upgrade --upgrade-strategy eager'
env:
ACTIONS_SETUP_PY3: ${{ github.event.inputs.py-act || '3.8' }}
PIP_INSTALL_OPTS: ${{ github.event.inputs.pip_opts || '--upgrade --upgrade-strategy eager' }}
PY_COLORS: 1
GHCR: ghcr.io
DOCKER_IMAGE: sbrg/pymodulon
jobs:
test:
runs-on: ${{ matrix.os }}
name: Test code (Python ${{ matrix.py }} - ${{ matrix.os }})
strategy:
max-parallel: 3
fail-fast: true
matrix:
os: [ubuntu-latest]
py: [3.7, 3.8]
steps:
-
name: Checkout repository
id: checkout
uses: actions/checkout@v2
-
name: Set up Python ${{ matrix.py }}
id: setup
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.py }}
-
name: Set Python ${{ matrix.py }} cache
id: cache
uses: actions/cache@v2
with:
path: ${{ env.pythonLocation }}
key: ${{ runner.os }}-pydeps-${{ env.pythonLocation }}-${{ hashFiles('setup.cfg') }}-${{ hashFiles('pyproject.toml') }}
-
name : Install dependencies
id: install-deps
run: |
python -m pip install ${{ env.PIP_INSTALL_OPTS }} pip setuptools tox tox-gh-actions coverage[toml]
sudo apt-get install ncbi-blast+
-
name: Run tests via tox
id: run-tox
run: |
python -m tox
-
name: Generate an XML report of coverage results
id: cov-report-xml
run: |
python -m coverage xml
-
name: Upload coverage report to Codecov.io
id: codecov-upload
uses: codecov/codecov-action@v1
with:
name: "py${{ matrix.py }}-${{ matrix.os }}"
token: ${{ secrets.CODECOV_TOKEN }}
fail_ci_if_error: true
docs:
runs-on: ubuntu-latest
name: Check documentation
steps:
-
name: Checkout
id: checkout
uses: actions/checkout@v2
-
name: Set up Python ${{ env.ACTIONS_SETUP_PY3 }}
id: setup
uses: actions/setup-python@v2
with:
python-version: ${{ env.ACTIONS_SETUP_PY3 }}
-
name: Set Python ${{ env.ACTIONS_SETUP_PY3 }} cache
id: cache
uses: actions/cache@v2
with:
path: |
${{ env.pythonLocation }}
key: ${{ runner.os }}-pydeps-${{ env.pythonLocation }}-${{ hashFiles('setup.cfg') }}-${{ hashFiles('pyproject.toml') }}
-
name : Install dependencies
id: install-deps
run: |
python -m pip install ${{ env.PIP_INSTALL_OPTS }} pip setuptools tox
-
name: Set up pandoc
id: pandoc
uses: r-lib/actions/setup-pandoc@v1
-
name: Run additional checks via tox
id: run-tox
run: |
python -m tox -e "docs, pypi-description"
publish-pypi:
needs: [test, docs]
runs-on: ubuntu-latest
name: Publish package to Python Packaging Index (PyPi)
if: startsWith(github.ref, 'refs/tags/v')
steps:
-
name: Checkout
id: checkout
uses: actions/checkout@v2
-
name: Set up Python
id: setup
uses: actions/setup-python@v2
with:
python-version: ${{ env.ACTIONS_SETUP_PY3 }}
-
name: Set Python ${{ env.ACTIONS_SETUP_PY3 }} cache
id: cache
uses: actions/cache@v2
with:
path: ${{ env.pythonLocation }}
key: ${{ runner.os }}-pydeps-${{ env.pythonLocation }}-${{ hashFiles('setup.cfg') }}-${{ hashFiles('pyproject.toml') }}
-
name : Install dependencies
id: install-deps
run: |
python -m pip install ${{ env.PIP_INSTALL_OPTS }} pip setuptools wheel build
-
name: Build package
id: build
run: |
python -m build -s -w .
-
name: Publish package to Test PyPI
id: test-publish
uses: pypa/gh-action-pypi-publish@master
with:
user: __token__
password: ${{ secrets.SBRG_MACHINE_PYPI_TEST_TOKEN }}
repository_url: https://test.pypi.org/legacy/
skip_existing: true
-
name: Publish package to PyPI
id: publish
uses: pypa/gh-action-pypi-publish@master
with:
user: __token__
password: ${{ secrets.SBRG_MACHINE_PYPI_TOKEN }}
push-to-registries:
needs: [publish-pypi]
name: Build and push Docker images to registries
runs-on: ubuntu-latest
if: startsWith(github.ref, 'refs/tags/v')
steps:
-
name: Checkout
id: checkout
uses: actions/checkout@v2
-
name: Docker meta
id: docker-meta
uses: crazy-max/ghaction-docker-meta@v1
with:
images: |
${{ env.DOCKER_IMAGE }}
${{ env.GHCR }}/${{ env.DOCKER_IMAGE }}
tag-sha: true
tag-match: '^v[0-9]+.[0-9]+.[0-9]+(?:.dev[0-9])?$'
# e.g., v{MAJOR}.{MINOR}.{PATCH}(.dev{})
-
name: Set up Docker Buildx
id: docker-buildx-setupx
uses: docker/setup-buildx-action@v1
-
name: Login to DockerHub
id: docker-login
uses: docker/login-action@v1
with:
username: ${{ secrets.SBRG_MACHINE_DOCKERHUB_USERNAME }}
password: ${{ secrets.SBRG_MACHINE_DOCKERHUB_TOKEN }}
-
name: Login to GitHub Container Registry
id: ghcr-login
uses: docker/login-action@v1
with:
registry: ${{ env.GHCR }}
username: ${{ secrets.SBRG_MACHINE_GHCR_USERNAME }}
password: ${{ secrets.SBRG_MACHINE_GHCR_TOKEN }}
-
name: Build and push image to registry
id: docker-build-push
uses: docker/build-push-action@v2
with:
file: Dockerfile
push: true
tags: ${{ steps.docker-meta.outputs.tags }}