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Update version/download
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davmlaw committed Jul 14, 2024
1 parent ed8e6e0 commit d63eca5
Showing 1 changed file with 5 additions and 2 deletions.
7 changes: 5 additions & 2 deletions annotation/templates/annotation/annotation_detail.html
Original file line number Diff line number Diff line change
Expand Up @@ -249,10 +249,13 @@ <h5>RefSeq GRCh38</h5>
{% comment %}
I asked dbNSFP guy to host just the genes gz on their site, so check maybe it's up and we can remove our own hosting of it
{% endcomment %}
Download <a href="http://variantgrid.com/static/annotation_download/dbNSFP4.3_gene.complete.gz">dbNSFP4.3_gene.complete.gz</a> (43Mb) - hosted on variantgrid.com
Download <a href="http://variantgrid.com/download/dbNSFP4.5_gene.complete.gz">dbNSFP4.5_gene.complete.gz</a> (43Mb) - hosted on variantgrid.com
This is just the gene data extracted from the <a href="https://sites.google.com/site/jpopgen/dbNSFP">dbNSFP</a> release.

<code>{{ python_command }} manage.py import_dbnsfp_gene_annotation --dbnsfp-version=4.3 dbNSFP4.3_gene.complete.gz</code>
<code>
wget http://variantgrid.com/download/dbNSFP4.5_gene.complete.gz
{{ python_command }} manage.py import_dbnsfp_gene_annotation --dbnsfp-version=4.5 dbNSFP4.5_gene.complete.gz
</code>
{% endinstall-instructions %}
{% endlabelled %}

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