issue SACGF/variantgrid_private#3652 - properly remove allele liftover

SACGF · Aug 8, 2024 · 82382b3 · 82382b3
1 parent 46c191d
commit 82382b3
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/snpdb/management/commands/clingen_allele_linked_variants_reference_base_check.py b/snpdb/management/commands/clingen_allele_linked_variants_reference_base_check.py
@@ -36,7 +36,8 @@ def handle(self, *args, **options):
                     if existing_vc != clingen_vc:
                         logging.info(f"{allele} has variant {repr(existing_vc)} not matching expected for build {va.genome_build}: {repr(clingen_vc)}")
                         if not dry_run:
-                            liftover_res = AlleleLiftover.objects.filter(allele=allele, genome_build=va.genome_build).delete()
+                            liftover_res = AlleleLiftover.objects.filter(variant_allele=allele,
+                                                                         liftover__genome_build=va.genome_build).delete()
                             logging.info(f"Removing liftover record: %s", liftover_res)
                             va_res = va.delete()
                             logging.info(f"Unlinking variant: %s", va_res)