issue #1093 - bump matplotlib - comment on version freeze was newer o…

…nes break 3.11 - confirming that latest matplotlib (3.9.1) works fine now on 3.11 and 3.12

Had to fix a deprecated method, tested chrom graphs still work

library/graphs/chromosomes_graph.py

@@ -3,7 +3,6 @@
 """
 
 import pandas as pd
-from matplotlib.collections import BrokenBarHCollection
 
 from library.genomics import format_chrom
 from library.utils import sorted_nicely
@@ -70,7 +69,7 @@ def plot_chromosomes(ax, cytoband_filename, has_chr=False, **kwargs):
 
     for xranges, yrange, colors, contig_name in sorted_ideograms(cytoband_filename, **kwargs):
         contig_name = format_chrom(contig_name, has_chr)
-        coll = BrokenBarHCollection(xranges, yrange, facecolors=colors)
+        coll = ax.broken_barh(xranges, yrange, facecolors=colors)
         coll.set_alpha(chrom_alpha)
         ax.add_collection(coll)
         center = yrange[0] + yrange[1] / 2.

requirements-dev.txt

@@ -51,7 +51,7 @@ ipython
 kombu
 levenshtein
 Markdown
-matplotlib==3.6.1
+matplotlib
 more_itertools
 mozilla_django_oidc
 nameparser