Skip to content

Commit

Permalink
issue #3634 - was dying for non-aliases
Browse files Browse the repository at this point in the history
  • Loading branch information
davmlaw committed Jul 8, 2024
1 parent de5dfe0 commit 1a5cf11
Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions snpdb/signals/variant_search.py
Original file line number Diff line number Diff line change
Expand Up @@ -515,8 +515,10 @@ def _search_hgvs(hgvs_string: str, user: User, genome_build: GenomeBuild, visibl
transcript_versions = set()
mane_status_by_transcript = {}
for mane, alias in mane_and_aliases:
msg_hgvs_gene_search = msg_hgvs_given_symbol + f" Matched to MANE gene symbol '{alias.gene_symbol}' " + \
f"via alias {alias.alias} ({alias.get_source_display()})."
msg_hgvs_gene_search = msg_hgvs_given_symbol
if alias:
msg_hgvs_gene_search += f" Matched to MANE gene symbol '{alias.gene_symbol}' " + \
f"via alias {alias.alias} ({alias.get_source_display()})."

gene_tvs, gene_mane_status = _get_search_hgvs_gene_symbol_transcripts(mane.symbol, genome_build)
transcript_versions.update(gene_tvs)
Expand Down

0 comments on commit 1a5cf11

Please sign in to comment.