issue #985 - don't use bcftools rmdup as it removed modified imported… #4454
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v2, github/codeql-action/init@v2, github/codeql-action/autobuild@v2, github/codeql-action/analyze@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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CodeQL Action v2 will be deprecated on December 5th, 2024. Please update all occurrences of the CodeQL Action in your workflow files to v3. For more information, see https://github.blog/changelog/2024-01-12-code-scanning-deprecation-of-codeql-action-v2/
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The setup-python-dependencies input is deprecated and no longer has any effect. We recommend removing any references from your workflows. See https://github.blog/changelog/2024-01-23-codeql-2-16-python-dependency-installation-disabled-new-queries-and-bug-fixes/ for more information.
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