update

RoyCaitSith · Nov 10, 2023 · 0bb9525 · 0bb9525
1 parent f87721e
commit 0bb9525
Showing 1 changed file with 52 additions and 49 deletions.
diff --git a/bash_scripts/copy_bash_profile b/bash_scripts/copy_bash_profile
@@ -31,18 +31,18 @@ module load perl
 module load grib
 module load ncview
 module load aws-cli/2.2.29
-module load intel-oneapi-compilers/2021.4.0
-module load openmpi/4.1.1
-module load netcdf-c/4.8.1 netcdf-fortran/4.5.3
-module load parallel-netcdf/1.12.2
-module load hdf5/1.10.7
+#module load intel-oneapi-compilers/2021.4.0
+#module load openmpi/4.1.1
+#module load netcdf-c/4.8.1 netcdf-fortran/4.5.3
+#module load parallel-netcdf/1.12.2
+#module load hdf5/1.10.7
 
-export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-ompi"
-export PATH="$NETCDF:$PATH"
-export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH"
-export HDF5="$HDF5_ROOT"
-export PATH="$HDF5:$PATH"
-export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH"
+#export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-ompi"
+#export PATH="$NETCDF:$PATH"
+#export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH"
+#export HDF5="$HDF5_ROOT"
+#export PATH="$HDF5:$PATH"
+#export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH"
 
 #export J="-j 8"
 #export WRF_EM_CORE="1"
@@ -53,45 +53,15 @@ export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH"
 
 # GSI V3.7
 #module purge
-#module load cmake/3.15.3
-#module load intel-oneapi-compilers/2021.4.0 intel-oneapi-mpi/2021.4.0 intel-oneapi-mkl/2022.0.2 hdf5
-
-#export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-impi"
-#export PATH="$NETCDF:$PATH"
-#export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH"
-#export HDF5="$HDF5_ROOT"
-#export PATH="$HDF5:$PATH"
-#export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH"
-
-# Environment for WRFPLUS, RTTOV, WRFDA, and DART
-#export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-ompi"
-#export PATH="$NETCDF:$PATH"
-#export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH"
-#export HDF5="$HDF5_ROOT"
-#export PATH="$HDF5:$PATH"
-#export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH"
-
-#export WRFPLUS_DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/DART/WRFPLUS"
-#export RTTOV="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/DART/rttov_12.1"
-
-# NCEPlibs
-#export DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software"
-#export JASPER_INC="$DIR/grib2/include" 
-#export PNG_INC="$JASPER_INC"
-
-# UPP
-#export NCEPLIBS_DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/NCEPlibs"
+module load cmake/3.15.3
+module load intel-oneapi-compilers/2021.4.0 intel-oneapi-mpi/2021.4.0 intel-oneapi-mkl/2022.0.2 hdf5
 
-# Environment for GFDL Vortex Tracker
-#export PNETCDF=$PARALLEL_NETCDF_ROOT
-#export PATH="$PNETCDF:$PATH"
-#export LD_LIBRARY_PATH="$PNETCDF/lib:$LD_LIBRARY_PATH"
-#export DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software"
-#export JASPERLIB="$DIR/grib2/lib"
-#export JASPERINC="$DIR/grib2/include" 
-#export LIB_Z_PATH="$JASPERLIB"
-#export LIB_PNG_PATH="$JASPERLIB"
-#export LIB_JASPER_PATH="$JASPERLIB"
+export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-impi"
+export PATH="$NETCDF:$PATH"
+export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH"
+export HDF5="$HDF5_ROOT"
+export PATH="$HDF5:$PATH"
+export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH"
 
 # GSI Github
 #module use /uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/hpc-stack/modulefiles/stack
@@ -131,6 +101,25 @@ export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH"
 #export FCFLAGS="-I$GSI_DIR/build/include $FCFLAGS"
 #export FCFLAGS="-I$HDF5/include $FCFLAGS"
 
+# NCEPlibs
+export DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software"
+export JASPER_INC="$DIR/grib2/include" 
+export PNG_INC="$JASPER_INC"
+
+# UPP
+export NCEPLIBS_DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/NCEPlibs"
+
+# Environment for GFDL Vortex Tracker
+export PNETCDF="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/PnetCDF"
+export PATH="$PNETCDF:$PATH"
+export LD_LIBRARY_PATH="$PNETCDF/lib:$LD_LIBRARY_PATH"
+export DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software"
+export JASPERLIB="$DIR/grib2/lib"
+export JASPERINC="$DIR/grib2/include" 
+export LIB_Z_PATH="$JASPERLIB"
+export LIB_PNG_PATH="$JASPERLIB"
+export LIB_JASPER_PATH="$JASPERLIB"
+
 # Environment for installing HWRF
 #export DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software"
 #export SCRATCH="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/HWRF"
@@ -156,6 +145,17 @@ export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH"
 #export LIB_PNG_PATH="${JASPERLIB}"
 #export LIB_JASPER_PATH="${JASPERLIB}"
 
+# Environment for WRFPLUS, RTTOV, WRFDA, and DART
+#export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-ompi"
+#export PATH="$NETCDF:$PATH"
+#export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH"
+#export HDF5="$HDF5_ROOT"
+#export PATH="$HDF5:$PATH"
+#export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH"
+
+#export WRFPLUS_DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/DART/WRFPLUS"
+#export RTTOV="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/DART/rttov_12.1"
+
 # ECMWF
 #export ECMWF_API_URL="https://api.ecmwf.int/v1"
 #export ECMWF_API_KEY="f0e9e36bd2c4ce37ff7b84c9ae29aa5b"
@@ -168,3 +168,6 @@ export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH"
 # Miniconda3
 export PATH="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/mymini3/bin:$PATH"
 export PYTHONPATH="$HOME/climetlab-my-plugin/functions:$PYTHONPATH"
+
+# git-lfs
+export PATH="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/git-lfs-3.4.0/bin:$PATH"