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Tools for aligning very large ssEM image stacks on a compute cluster.

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FijiBento

Tools for performing image alignment (mainly for serial section EM) on very large datasets, in parallel on a compute cluster.

Based on Stephan Saalfeld's alignment tools which form part of Fiji and TrakEM2 (least squares registration, and elastic registration etc): https://github.com/axtimwalde/mpicbg And renderer project https://github.com/saalfeldlab/render

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Tools for aligning very large ssEM image stacks on a compute cluster.

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  • Java 58.7%
  • Python 41.3%