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Fix problems with search for maxNetworkLeakRates during pruning #178

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@bbuesser bbuesser commented Feb 2, 2014

fixes #176

shamelmerchant and others added 7 commits December 20, 2013 16:36
Cantherm was failing because it was still refering to LenardJones
class which is now removed after the transport branch has been merged.

Made the writing of output of measure also consistent to use
TransportModel
Commit 5c4a2da would
modify the label in the input file causing Cantherm to crash
when its trying to calculate kinetics for that reaction.
- numPdepNetworks = self.networkCount was the number of PdepNetworks
ever created in that model

- len(self.networkList) is the number of actually existing PdepNetworks
at any time

fixes ReactionMechanismGenerator#176
- limit search on labeled atoms
- this is currently RMG-specific to track electronic states as attribute
of single atoms, we have to consider moving on to tracking it as a
species
property
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rwest commented Feb 6, 2014

Cherry-picked relevant commits onto master. Thanks Beat.

@rwest rwest closed this Feb 6, 2014
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IndexError looking for maxNetworkLeakRates during pruning?
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