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Merge pull request #141 from Radiobiology-Informatics-Consortium/radfix
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add radiation thing, move electromagnetic radiation
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@DanBerrios
DanBerrios authored Mar 9, 2023
2 parents fdfbf91 + 869b146 commit 5898a8f
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70 changes: 54 additions & 16 deletions rbo-base.owl
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xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/rbo/rbo-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2022-10-27/rbo-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/rbo/releases/2023-03-02/rbo-base.owl"/>
<dc:description>RBO is an ontology for the effects of radiation on biota in terrestrial and space environments.</dc:description>
<dc:title>Radiation Biology Ontology</dc:title>
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<terms:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-10-27</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-03-02</owl:versionInfo>
</owl:Ontology>


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<!-- http://purl.obolibrary.org/obo/ENVO_01001024 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01001024"/>



<!-- http://purl.obolibrary.org/obo/ENVO_01001488 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01001488"/>
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<!-- http://purl.obolibrary.org/obo/RBO_00000013 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00000013">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_01001023"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00015000"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The amount of ionizing radiation to which a member of the population on Earth is exposed from natural sources, such as terrestrial radiation from naturally-occurring radionuclides in the soil, cosmic radiation originating in outer space, and naturally-occurring ra</obo:IAO_0000115>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">background ionizing radiation</rdfs:label>
</owl:Class>
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<!-- http://purl.obolibrary.org/obo/RBO_00000116 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00000116">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_01001023"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00015000"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Particle or electromagnetic radiation with sufficient energy to liberate one or more electrons from an atom.</obo:IAO_0000115>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ionising radiation</obo:IAO_0000118>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCIT:C17052</oboInOwl:hasDbXref>
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<!-- http://purl.obolibrary.org/obo/RBO_00000117 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00000117">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_01001024"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000111 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">charged particle</obo:IAO_0000111>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Charged particles with kinetic energy imparted by natural or artificial means (such as by a particle accelerator)</obo:IAO_0000115>
<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">charged particle</obo:IAO_0000118>
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<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000299"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ENVO_01001023"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/RBO_00015000"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
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<obo:IAO_0000118 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mGy/sec</obo:IAO_0000118>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UO:0010065</oboInOwl:hasDbXref>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">miligray per second</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#string">true</owl:deprecated>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TRUE</owl:deprecated>
</owl:Class>


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<!-- http://purl.obolibrary.org/obo/RBO_00015000 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00015000">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">That energy which is transferred in space and time as part of the process of radiation (ENVO:01001023).</obo:IAO_0000115>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">radiation</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/RBO_00015001 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00015001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Uncharged particles with kinetic energy imparted by natural or artificial means (such as by a particle accelerator)</obo:IAO_0000115>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">neutral particle radiation</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/RBO_00015002 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00015002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00005041"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An assay of the pattern (frequency and spatial distribution) of ionization events produced by energy deposition in time and space in a substance characterized by linear dimensions of the order of 1-100 nanometers</obo:IAO_0000115>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">See H.H. Rossi, Microdosimetry and Radiobiology, Radiation Protection Dosimetry, Volume 13, Issue 1-4, 1 December 1985, Pages 259�265, https://doi.org/10.1093/rpd/13.1-4.259 and Gustavo A. Santa Cruz,Microdosimetry: Principles and applications,Reports of Practical Oncology &amp; Radiotherapy,Volume 21, Issue 2,2016,Pages 135-139,ISSN 1507-1367,https://doi.org/10.1016/j.rpor.2014.10.006.</obo:IAO_0000119>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Usually a track structure assay at nm scale</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nanodosimetry assay</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/RBO_00015003 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_00015003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00005041"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An assay of the pattern (frequency and spatial distribution) of ionization events produced by energy deposition in time and space in a substance characterized by linear dimensions of the order of 1-100 micrometers</obo:IAO_0000115>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">See H.H. Rossi, Microdosimetry and Radiobiology, Radiation Protection Dosimetry, Volume 13, Issue 1-4, 1 December 1985, Pages 259�265, https://doi.org/10.1093/rpd/13.1-4.259 and Gustavo A. Santa Cruz,Microdosimetry: Principles and applications,Reports of Practical Oncology &amp; Radiotherapy,Volume 21, Issue 2,2016,Pages 135-139,ISSN 1507-1367,https://doi.org/10.1016/j.rpor.2014.10.006.</obo:IAO_0000119>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Usually a track structure assay at micrometre scale</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">microdosimetry assay</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/RBO_010000 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_010000">
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<!-- http://purl.obolibrary.org/obo/RBO_010009 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_010009">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/ENVO_01001024"/>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/RBO_00015001"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The sample was irradiated with fast neutrons.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Neutrons of energies above a few hundred kiloelectron volts (keV)</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jack Miller</obo:IAO_0000117>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/RBO_010017">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PATO_0001018"/>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Radiation quality is often expressed in terms of the linear energy transfer of the ionising particles that deliver the absorbed dose. Rossi, Harald H. “Specification of Radiation Quality.” Radiation Research, vol. 10, no. 5, Radiation Research Society, 1959, pp. 522–31, https://doi.org/10.2307/3570787. But this is an over simplification.</obo:IAO_0000112>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Radiation quality is often expressed in terms of the linear energy transfer of the ionising particles that deliver the absorbed dose. Rossi, Harald H. Specification of Radiation Quality. Radiation Research, vol. 10, no. 5, Radiation Research Society, 1959, pp. 522 31, https://doi.org/10.2307/3570787. But this is an over simplification.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Is a quality of radiation that reflects the fluence spectrum of charged and neutral particles within the material or medium where dose is being deposited.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jack Miller</obo:IAO_0000117>
<obo:IAO_0000119 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">NCRP Glossary (https://ncrponline.org/wp-content/themes/ncrp/PDFs/NCRP-Composite-Glossary.pdf) and see https://melodi-online.eu/wp-content/uploads/2021/04/02-What-is-radiation-quality-Goodhead.pdf</obo:IAO_0000119>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">radiation quality</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#string">true</owl:deprecated>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TRUE</owl:deprecated>
</owl:Class>


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