Skip to content

Commit

Permalink
update docs
Browse files Browse the repository at this point in the history
  • Loading branch information
nizamibilal committed Mar 26, 2018
1 parent 08e64e6 commit 39e530e
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docs/source/pca_tut.rst
Original file line number Diff line number Diff line change
Expand Up @@ -162,7 +162,7 @@ Run the following command to perform t-SNE using pairwise RMSD of CA atoms as th

Output files include 2D plot of the first 3 PCs, which can be visualize using xmgrace as described earlier.

Note: The t-SNE algorithm is non-linear and highly flexible, which makes it difficults to interpret the results.
Note: The t-SNE algorithm is non-linear and highly flexible, which makes it difficult to interpret the results.
Different set of parameters gives very different output. Users are required to try different set of values for
“perplexity” , "learning rates", and "number of iteration". A useful discussion covering these issues can be found
here https://distill.pub/2016/misread-tsne/
Expand Down

0 comments on commit 39e530e

Please sign in to comment.