fix: force tuple

RIVM-bioinformatics · Jul 25, 2024 · 46c3608 · 46c3608
1 parent 7d8fbe4
commit 46c3608
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/juno_library/juno_library.py b/juno_library/juno_library.py
@@ -392,10 +392,10 @@ def __parse_input_type(self) -> None:
 
         """
         conversion_dict = {
-            "fastq": ("fastq"),
-            "fasta": ("fasta"),
-            "vcf": ("vcf"),
-            "bam": ("bam"),
+            "fastq": ("fastq",),
+            "fasta": ("fasta",),
+            "vcf": ("vcf",),
+            "bam": ("bam",),
             "both": ("fastq", "fasta"),
             "fastq_and_fasta": ("fastq", "fasta"),
             "fastq_and_vcf": ("fastq", "vcf"),

diff --git a/tests/library_tests.py b/tests/library_tests.py
@@ -649,7 +649,7 @@ def test_recognize_juno_variant_typing_output(self) -> None:
         )
 
         pipeline = Pipeline(
-            **default_args, argv=["-i", str(input_dir)], input_type=("fasta")
+            **default_args, argv=["-i", str(input_dir)], input_type=("fasta",)
         )
         pipeline.setup()
         self.assertTrue(pipeline.input_dir_is_juno_variant_typing_output)