fix: restrict numpy to <2 #90
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| # Based on: https://github.com/marketplace/actions/setup-miniconda#example-1-basic-usage | |
| name: Base Juno pipeline | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest} | |
| - {os: ubuntu-18.04} | |
| - {os: ubuntu-latest} | |
| name: Testing main classes ${{ matrix.config.os }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setting up conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| mamba-version: "0.9.2" | |
| channels: conda-forge, anaconda, bioconda, biocore, defaults | |
| channel-priority: true | |
| environment-file: base_juno_pipeline/envs/master_env.yaml | |
| activate-environment: base_juno | |
| auto-activate-base: false | |
| - name: Conda list | |
| shell: bash -l {0} | |
| run: conda list | |
| - name: Test base | |
| shell: bash -l {0} | |
| run: python tests/test_base_juno_pipeline.py |