v0.4.3

0.4.3 (2024-06-03)

Bug Fixes

• disable filter_status in mqc report (327fd5a)

v0.4.2

0.4.2 (2023-11-08)

Bug Fixes

• update master env path (2314e0a)

v0.4.1

0.4.1 (2023-10-26)

Performance Improvements

• set new ref for cauris (0ada052)

v0.4.0

0.4.0 (2023-10-19)

Features

• allow running on cauris project (9eb3e75)

v0.3.0

0.3.0 (2023-10-18)

Miscellaneous Chores

• release 0.3.0 (f13ed94)

v0.2.2

0.2.2 (2023-07-18)

Dependencies

• remove anaconda and defaults channel and add nodefaults channel to environments (0279943)

v0.2.1

0.2.1 (2023-07-04)

Bug Fixes

• add HPC resources to last rules (cd5d1f2)

Performance Improvements

• set longer job time (d8e95fb)

v0.2.0

0.2.0 (2023-06-27)

Features

• add extra picard qc (c4fdde3)
• customise mqc report (d9140f6)

Bug Fixes

• finalise qc variant calling (6111f81)
• switch conda activation (528183a)

Dependencies

• upgrade smk to prevent pip updating smk (bf081f9)

v0.1.0

0.1.0 (2023-05-08)

Features

• add bbtools pileup and bbtools summary (5641319)
• add multiqc and some bug fixes: add zstd and zstandard dependency to master environment, run on default with -w 180 for variant calling (e721806)
• add tables with variant qc (2da6045)
• add variant evaluation functionality of gatk and modify multiqc file (da0f4c9)
• Give default time limit, replace required reference with required species (cdc1ba0)

Bug Fixes

• args typo (22a326e)

Dependencies

• remove mamba env (7a674c0)

Documentation

• add license (1dc90b8)
• add readme (315ffe2)