updated unsupervised test case

RECETOX · Sep 15, 2022 · feecc56 · feecc56
1 parent c381268
commit feecc56
Showing 1 changed file with 7 additions and 7 deletions.
diff --git a/tests/testthat/test-unsupervised.R b/tests/testthat/test-unsupervised.R
@@ -1,23 +1,23 @@
 patrick::with_parameters_test_that("basic unsupervised test", { 
   test_files <- sapply(files, function(x) file.path("../testdata/input", x))
 
-  expected <- arrow::read_parquet(file.path("../testdata/recovered", paste0(.test_name, ".parquet")))
+  expected <- arrow::read_parquet(file.path("../testdata/unsupervised", paste0(.test_name, "_unsupervised.parquet")))
 
   result <- unsupervised(test_files, cluster = get_num_workers())
   keys <- c("mz", "rt", "sample", "sample_rt", "sample_intensity")
   actual <- result$recovered_feature_sample_table
 
-  levels(actual$sample) <- sapply(files, get_sample_name)
-  actual <- actual |> dplyr::arrange_at(keys)
-  expected <- expected |> dplyr::arrange_at(keys)
+  # levels(actual$sample) <- sapply(files, get_sample_name)
+  # actual <- actual |> dplyr::arrange_at(keys)
+  # expected <- expected |> dplyr::arrange_at(keys)
 
-  actual_to_compare <- dplyr::select(actual, keys)
-  expected_to_compare <- dplyr::select(expected, keys)
+  # actual_to_compare <- dplyr::select(actual, keys)
+  # expected_to_compare <- dplyr::select(expected, keys)
 
   report <- dataCompareR::rCompare(actual, expected, keys = keys, roundDigits = 3, mismatches = 100000)
   dataCompareR::saveReport(report, reportName = paste0(.test_name,"_unsupervised_report"), showInViewer = FALSE, HTMLReport = FALSE, mismatchCount = 10000)
 
-  expect_equal(actual_to_compare, expected_to_compare, tolerance = 0.01)
+  expect_equal(actual, expected, tolerance = 0.01)
 }, patrick::cases(
   mbr_test = list(files = c("mbr_test0.mzml", "mbr_test1.mzml", "mbr_test2.mzml")),
   RCX_shortened = list(files = c("RCX_06_shortened.mzML", "RCX_07_shortened.mzML", "RCX_08_shortened.mzML"))