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Migrate init stage to plugins (#10689)
This commit updates the preset pass manager construction to only use plugins for the init stage. To accomplish this the previously hard coded built-in pass manager used for each optimization level are refactored to be in a plugin named "default". One thing that is changed in this PR is that the use of `generate_control_flow_options_check()` is moved to the `pre_init` stage. The reason for this is because the way the init stage was being constructed in the preset pass managers was to do initial checking of any methods, and this was unconditionally being run. This is a more logical fit for pre_init stage because it should run before any specified plugin. Fixes: #10687 Fixes: #8661
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